Accessing the right computational tools at the right moment can make a big difference in molecular modeling workflows. Whether you’re preparing a docking simulation, visualizing biomolecular systems, or connecting to external services, having quick access to the right functionality can simplify your work and save time.
That’s where the Apps panel in SAMSON becomes a practical asset for scientists and students alike.
What are SAMSON Apps?
SAMSON is designed to be modular. The platform includes built-in apps and allows users to add more according to their needs. An app in SAMSON is a type of extension that can:
- Connect to external executables or web services
- Wrap existing code and integrate it into the SAMSON environment
- Provide new functionality through the SAMSON API
For molecular modelers, this means flexibility. Instead of switching between several standalone tools, many essential features can be accessed through a single interface.
Where to Find Apps
Apps can be found in the SAMSON interface under Home > Apps. There, you can see a list of available apps and manage them. Some apps come pre-installed, and many more are available via SAMSON Connect.
Example: Docking with AutoDock Vina
One of the commonly used apps is the AutoDock Vina Extended App. It’s popular among users performing docking simulations and showcases how SAMSON apps encapsulate complex workflows into accessible interfaces.
This app gives straightforward access to one of the most frequently used docking engines, directly from within SAMSON. Users can set up and run docking simulations without ever leaving their project workspace, and they benefit from integrated visualization and analysis tools.
Can You Make Your Own?
Absolutely. If you’re working with specialized algorithms or want to integrate a custom workflow into your molecular design environment, you can create your own apps by using the SAMSON Extension Generator. No need to reinvent your entire workflow—just adapt your tools to SAMSON and make them part of your seamless design experience.
Why This Matters
Many modelers face the challenge of juggling tools and data formats across different platforms. By using SAMSON’s modular app architecture, you can reduce context-switching and focus more on analysis and design. Plus, the ability to contribute or tailor apps for your team or research lab promotes collaboration and consistency.
Interested in exploring what apps are available or building your own? Visit the full documentation page here to learn more.
SAMSON and all SAMSON Extensions are free for non-commercial use. You can get SAMSON at https://www.samson-connect.net.