Author: OneAngstrom

In molecular modeling, understanding the stability of interactions across a path is a critical task. Whether you’re investigating protein-ligand interactions, gating mechanisms, or transient contacts, the ability to pinpoint which molecular interactions are stable and which are fleeting can save…

Molecular modelers often encounter a common challenge: limited computational resources on personal machines, especially when tackling large and complex molecular systems. Running GROMACS stages like equilibration or production molecular dynamics locally can be a significant bottleneck. This is where the…

When you are modeling complex molecular dynamics, following the movement of particular atoms or regions of interest in real time can be incredibly useful but also challenging. SAMSON offers a solution to this common pain point with its Follow Atoms…

Have you ever wanted to progressively hide specific atoms and bonds in your molecular models to highlight critical details during your presentations or simulations? The Conceal Atoms animation feature in SAMSON is a perfect tool that allows you to achieve…

For molecular modelers, mastering software workflows can be an intimidating task. The complexity of modern molecular design tools often creates a steep learning curve. To address this, SAMSON’s Interactive Tutorials are a game-changer for anyone looking to gain hands-on, guided…

Have you ever needed to visually emphasize certain structures or processes in your molecular models, but struggled to find a clear and impactful way to do it? The Pulse animation in SAMSON can provide a solution by enabling nodes to…

When working with molecular modeling and simulations, datasets often have a noisy or uneven distribution of scalar values such as distances, energies, or RMSD. These fluctuations can make it challenging to identify meaningful patterns or trends. This is where density…