Author: OneAngstrom

Understanding the intricate motions of biomolecules like proteins, RNA, or DNA is a key challenge for molecular modelers. Predicting and visualizing conformational changes, such as the opening of a protein binding site, can reveal essential insights into molecular function and…

In molecular modeling, accurate measurements are crucial for analyzing molecular structures, inspecting interactions, and performing structural adjustments efficiently. The Measure editor in SAMSON facilitates quick measurements of bond lengths, distances, angles, and dihedrals, while also allowing these measurements to be…

Molecular modelers rely on efficient tools to navigate and manipulate molecular structures. Managing these tasks within SAMSON, the integrative molecular design platform, becomes simpler when utilizing active editors. This blog post will walk you through the concept of active editors,…

Carbon nanotubes (CNTs) have become a cornerstone in molecular modeling, nanotechnology, and material design. From nanosensors to molecular transport systems, their diverse applications make them essential for researchers. Yet, building customized CNT models efficiently can still be a challenge. With…

Protein modeling often requires understanding how a molecule transitions between two states. Whether you’re studying conformational changes, building realistic reaction coordinates for free energy simulations, or analyzing transition states, crafting a continuous, biologically meaningful path can be a daunting task.…

For molecular modelers, managing and visualizing structures effectively can be a significant challenge, especially when working with complex biomolecular models. One particularly useful feature of SAMSON is the Sequence View tool, which bridges the gap between sequence and spatial representation,…

Molecular modeling often involves complex structures, and presenting them effectively can be a real challenge. Whether you’re sharing insights about molecular dynamics or visually exploring structural details, clarity is key. The Disassemble animation in SAMSON provides a straightforward way to…

For molecular modelers, creating custom polymers using specific chemical compositions can often feel like a daunting task. In particular, managing monomer units, ensuring proper connections, and avoiding structural clashes tend to be challenging aspects of the workflow. SAMSON’s Polymer Builder…