For researchers working on molecular modeling and structural biology, understanding the structural dynamics of proteins is essential. One particularly relevant example is studying how the spike protein of SARS-CoV-2 transitions from a closed state to an open state. This transition…

Creating engaging and visually clear molecular presentations can be a challenging task for many molecular modelers. One recurrent pain point is the need to effectively highlight changes, isolate specific molecular structures, or depict dynamic sequences across frames. If you’re looking…

In molecular modeling and design, mistakes and iterations are part of the process. But how do you ensure these iterative steps don’t lead to frustration or data loss? This is where SAMSON’s History View, along with its undo and redo…

For molecular modelers, precise control over residue selection and visualization is essential. Whether you’re analyzing a complex molecular structure or preparing a 3D visualization, navigating residues efficiently can be a real challenge. Fortunately, SAMSON’s Sequence View offers an interactive and…

Anyone who has worked on molecular modeling understands the frustration of losing a carefully adjusted camera angle during animation sequences. A small shift in the view can disrupt presentations, confuse collaborators, or add unnecessary rework. Fortunately, SAMSON’s Hold camera animation…

For molecular modelers, creating compelling visualizations is often crucial to communicate complex structural data effectively. One of the common pains is achieving the perfect camera orbit around a molecular target to convey spatial relationships, symmetry, or dynamics in presentations or…

Setting up molecular dynamics simulations can be a daunting task, especially when preparing molecular systems, defining simulation parameters, or handling complex workflows. The GROMACS Wizard within the SAMSON platform streamlines these tasks, making it easier for researchers to achieve accurate…

Have you ever struggled to sift through large datasets of molecular structures to find specific patterns? For molecular modelers, this can be a time-consuming task, especially when dealing with complex requirements, like locating fragments containing precise functional groups. The SMILES…

Molecular modelers often face the challenge of creating biologically realistic environments for simulations, such as lipid layers or bilayers, surrounding proteins. This process can be tedious and involves careful alignment, margin adjustment, and molecule placement. Fortunately, SAMSON’s Molecular Box Builder…