One of the challenges faced by many molecular modelers when preparing visualizations is controlling the timing and visibility of molecular components in animations. Whether you’re building an educational video, a research presentation, or simply exploring dynamic behavior, it can be…

As molecular modelers, we often need specific tools for our research—whether it’s visualization tweaks, structure preparation helpers, or access to advanced simulation algorithms. But installing and managing plug-ins or modules across platforms can be frustrating and time-consuming, especially when you…

When studying molecular systems—especially large biomolecules—understanding how ligands move, how proteins shift domains, or how groups of atoms migrate through a structure is often central to your investigation. Yet, translating this dynamic behavior from raw trajectories into visually meaningful representations…

Molecular modeling often involves inspecting structures from many angles: a close-up of an active site, a top-down view of a cavity, or a wide view of the entire system. Constantly tweaking the camera position to get these views back and…

Integrative molecular modeling often benefits significantly from using Python packages—whether it’s for data science, simulation, machine learning, or visualization. But managing packages in scientific platforms can often be a frustrating task, especially when setting up environments or dealing with dependencies.…

When analyzing molecular simulations or transitions between conformations, it’s often important to observe not just how a system evolves forward in time—but also how it retraces its steps. Whether you’re investigating conformational cycles, analyzing equilibration processes, or simply making presentations…

When simulating complex molecular systems in motion—protein-ligand interactions, polymer dynamics, or viral capsid assembly—keeping track of relevant parts of the system visually can be surprisingly difficult. As molecules twist, translate, or diffuse across the simulation space, camera viewpoints tend to…

Molecular assemblies often exhibit a variety of symmetric patterns — but selecting the one that best suits your modeling objective isn’t always straightforward. If you’re dealing with large protein complexes or viral capsids, you may run into a common scenario:…

When preparing a molecular animation, clarity is often just as important as accuracy. Whether you’re presenting a targeted conformation change or emphasizing a binding pocket, excess molecular clutter can become a visual distraction. Molecular modelers often face the issue of…

When presenting complex molecular systems, clarity is essential. One visually effective yet often underused technique is the vertical viewpoint shift — moving the camera up or down while keeping the orientation consistent. This is where SAMSON’s Pedestal camera animation becomes…