Hands-On Molecular Modeling: Learn by Doing in SAMSON

One of the most common frustrations that new users face when starting with molecular modeling platforms is the sheer complexity of tools and workflows. Even with excellent documentation, the transition from reading about a feature to applying it on your own model can feel overwhelming.

The interactive tutorials available directly in the SAMSON interface offer a solution many users might not even know exists — and it can significantly improve how quickly and efficiently you ramp up on using the platform for your scientific work.

What makes interactive tutorials different?

Instead of following static instructions in a separate manual, SAMSON’s interactive tutorials live inside the software itself. This means that as you explore the interface, execute actions, and visualize molecular structures, the tutorial is guiding you with step-by-step instructions directly in the workspace — almost like a GPS system tuned for researchers.

For example, let’s say you want to understand how to manipulate selections or use the viewport effectively. Instead of switching back and forth between reading documentation and trying steps manually (often getting lost in menus), you can:

  • Go to Help > Tutorials in the top SAMSON menu.
  • Select a tutorial that interests you — such as navigation basics or atom/property editing.
  • Click Start tutorial, and watch as the system starts guiding you interactively.

An overlay appears in your workspace, giving you contextual help with buttons and panels highlighted, reducing the cognitive friction of getting started. If you need to stop, just close the tip window located in the top-right corner of the viewport. You can always restart the tutorials whenever needed.

Why this helps molecular modelers

If you’re a molecular modeler working under time pressure (trying to prepare figures, analyze structural data, or explore simulation results), learning through action can greatly accelerate your familiarity with the interface and tools. This is especially helpful for those transitioning from other molecular design software or those in multidisciplinary teams who may not have deep modeling experience.

Another key advantage is confidence. Knowing that you’re using tools correctly and efficiently makes for more reproducible science — and fewer accidental errors from misused features.

Is it only for beginners?

Not necessarily. Even experienced users may appreciate a quick refresher or discover lesser-used features through the tutorials. They’re designed to be modular and focused — so you’re not locked into a full-length course just to learn how to use a specific tool.

More resources

If you’re working with SAMSON Extensions, you’ll find even more specialized tutorials in a separate section: SAMSON Extensions Tutorials. These are also designed to be practical and hands-on.

Interactive tutorials

To explore the full list of tutorials and how to access them, visit the official SAMSON interactive tutorials documentation page.

SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON at https://www.samson-connect.net.

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