OneAngstrom – Page 135

Side-to-Side Camera Moves: Easier Molecular Walkthroughs with the Truck Camera

When presenting complex molecular structures—whether small molecules, protein-ligand assemblies, or massive nanostructures—clear visualization plays a lead role in how effectively the structure communicates its function or properties. Molecular modelers often need to produce animations that smoothly guide the viewer through…

Smooth Camera Moves for Molecular Storytelling: Simple Dolly Animations in SAMSON

OneAngstrom

When preparing molecular visualizations, it’s not just about showing structures—it’s about telling a story. A common challenge for molecular modelers, educators, and researchers alike is how to smoothly guide the viewer’s attention in 3D animations without abrupt jumps or disorientations.…

Making Protein-Ligand Docking Results Easier to Interpret

OneAngstrom

When running protein-ligand docking simulations, getting results is only the first step. The real challenge often lies in interpreting those results—especially for complex systems—and sharing them in a clear and insightful way. If you've tried to analyze docking poses in…

Easily Visualize Reverse Molecular Trajectories in SAMSON

OneAngstrom

Creating meaningful molecular animations often means more than just showing atoms and bonds moving – it’s about telling a story of how molecules react, interact, and change over time. But what happens when you want to reverse that story? Whether…

Turning Molecular Animations into Slides: Using the Stop Effect in SAMSON

OneAngstrom

When presenting molecular mechanisms and designs, clarity is everything. Whether you’re teaching, presenting your research, or building interactive lessons, you want your audience to follow key steps of molecular dynamics or conformational changes without distractions or information overload. This is…

One Click to Clarity: Simplify Molecular Visualization with SAMSON Visual Presets

OneAngstrom

If you’ve ever spent more time tweaking molecular renderings than actually analyzing your structures, you’re not alone. Molecular modeling is a visually intensive science, but producing an insightful, publication-ready representation can feel like an art project. The issue isn’t the…

When You Can’t See It: Managing Label Visibility in Molecular Models

OneAngstrom

One of the most common friction points for molecular modelers—especially when working in complex systems—is label clutter. Labels help annotate molecules, atoms, or processes, but when not managed properly, they can quickly overcrowd your scene or simply disappear when you…

Dragging Atoms to Simulate Molecular Behavior in Real Time

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Modeling molecular systems traditionally relies on preparing static structures, launching simulation jobs, and then reviewing results afterward. But what if you could “grab” an atom in a molecule and instantly see how it moves and how the entire system responds?…

Customizing Protein-Ligand Structure Predictions with Boltz-2 in SAMSON

OneAngstrom

One of the most common challenges in molecular modeling today is generating reliable 3D structures of protein-ligand complexes when experimental data isn’t available. Whether you’re trying to evaluate a drug candidate, explore a new biomolecular interaction, or prepare input files…

Speeding Up NMR Structure Prediction by Assigning Methyl Groups

OneAngstrom

For molecular modelers working with protein-ligand complexes, Nuclear Magnetic Resonance (NMR) remains a go-to experimental method when X-ray crystallography becomes impractical. However, interpreting NMR data in silico, especially ambiguous NOESY peaks involving unassigned methyls, can quickly turn computationally expensive. When…