OneAngstrom – Page 214

Simplifying Molecular Presentations with the Hide Animation in SAMSON

One recurring challenge in molecular modeling is managing the clarity of complex scenes during presentations and animations. Whether you’re showcasing a molecular mechanism or preparing a tutorial for students, ensuring that only the relevant molecular parts are visible at any…

Missing a File Format? Here’s What You Can Do in SAMSON

OneAngstrom

Working with molecular models often starts with a file—whether it’s a Protein Data Bank (PDB) file, an electron density map, or a custom structure created in another modeling tool. But what if your file doesn’t open in your current software?…

Making Molecular Models Clearer: A Closer Look at Rendering Settings in SAMSON

OneAngstrom

When working with complex molecular models, visual clarity can make a big difference in understanding structures, communicating results, or preparing publication-grade visuals. However, users often find that models are cluttered, hard to interpret, or lacking depth—especially when default rendering settings…

Keeping Your Molecular Views Consistent with the ‘Hold Camera’ Animation

OneAngstrom

When presenting molecular simulations or building molecular animations, one common frustration among researchers is the camera suddenly shifting angles between frames. These unexpected changes can distract viewers, make interpretation harder, and reduce the clarity of your communication. If you’re working…

Running Molecular Dynamics in the Cloud, Without the Headaches

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One of the most common pain points faced by molecular modelers is accessing computational power. Many molecular dynamics simulations require hundreds of thousands—or even millions—of time steps, making them time-consuming and demanding to run on personal computers. This is especially…

Renaming and Selecting Files in SAMSON with the Node Specification Language

OneAngstrom

Managing complex molecular simulations often means dealing with numerous imported or generated files within a project. When the number of nodes grows, organizing and querying these files efficiently becomes key to staying productive. This is where the Node Specification Language…

Quickly Inspect Biomolecular Structures with Sequence View in SAMSON

OneAngstrom

Molecular modelers working with complex biomolecules like proteins often struggle with keeping track of a structure’s hierarchy. Highlighting specific residues, examining chains, understanding the secondary structure, or quickly locating mutations or bound ligands — all of this can become very…

Why Your SAMSON Extension Won’t Load (And What To Do About It)

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One of the less visible but surprisingly common issues molecular modelers face with SAMSON is a SAMSON Extension that refuses to load. Everything seems right — the Extension is installed, SAMSON is up and running — yet nothing happens. If…

Troubleshooting Invisible Lights in Molecular Scenes

OneAngstrom

Have you ever opened a complex molecular model in SAMSON, added lights to enhance your rendering, and still ended up with a mysteriously dark or underlit scene? You’re not alone. One common challenge molecular modelers face is understanding why lights…

Creating Better Molecular Presentations with Animation Effects in SAMSON

OneAngstrom

One of the frequent challenges in molecular modeling is presenting complex interactions, mechanisms, or structures in a clear and engaging way. Whether you’re teaching, preparing a conference talk, or summarizing your latest research, conveying molecular processes visually can be difficult.…