Author: OneAngstrom

When working on molecular simulations, selecting the right unit cell is a crucial, yet often overlooked, step. The choice of unit cell directly impacts computational efficiency and the accuracy of representing your molecular system under periodic boundary conditions. This post…

Molecular modeling can often feel like navigating a maze, especially when switching to a new platform or exploring advanced features. One of the challenges many encounter is understanding how to perform specific tasks efficiently in a complex environment like SAMSON.…

For molecular modelers seeking to understand the transitions between conformations in a system, optimizing transition paths is often a critical task. Whether you’re exploring ligand unbinding pathways or studying molecular dynamics, defining energy-efficient paths between conformations can be challenging. This…

Creating clear, engaging, and visually compelling molecular presentations can often be a daunting task for molecular modelers. Whether you’re trying to illustrate complex interactions, highlight results, or make your research stand out, animations and presentations are vital tools. Fortunately, the…

For molecular modelers diving into the intricacies of SARS-CoV-2 research, understanding the spike protein’s structural dynamics is crucial. The transition of the spike from its closed state to its open state is particularly significant, as this conformational shift enables the…

Collaboration is at the heart of scientific progress, and in molecular modeling, sharing your work efficiently and securely is crucial. Whether you want to publish groundbreaking insights or share data with collaborators, SAMSON’s document sharing capabilities let you do that…

In molecular modeling, smoothly navigating around your molecular systems is essential to gaining better insights and presenting your data effectively. However, vertically moving the view for an intuitive exploration of features in a molecular system can often seem cumbersome. This…

When working with molecular simulations, particularly in creating coarse-grained (CG) models, ensuring proper residue and chain numbering in your structures is vital. Without unique IDs and names, managing multiple replicas or structures can lead to errors down the line. If…

When working on molecular models, one of the key tools you’ll interact with in SAMSON is the camera. Whether you’re tweaking molecular structures, navigating complex systems, or presenting your work, optimizing how you utilize the camera can significantly improve your…

For molecular modelers, learning a new platform for molecular design can sometimes feel overwhelming, particularly with intricate tools and specialized workflows. If you’ve recently started exploring SAMSON, the platform’s Interactive Tutorials can be a game-changer, providing hands-on guidance to streamline…