When working on large biomolecules, modelers often need to focus on specific structural features of side chains—whether to study interaction sites, assess functional groups, or prep for simulations. One common challenge is identifying side chains based on their atomic composition.…
When working on complex molecular models, one of the last things you want is an overwhelming interface filled with tools competing for your attention. This is where SAMSON’s design choice around editors makes a difference. In SAMSON, only one editor…
One of the recurring challenges in molecular modeling is finding intuitive ways to visualize how molecules change over time. Whether you’re analyzing conformational transitions, exploring reaction mechanisms, or preparing a compelling presentation of a simulation, being able to animate a…
When working with large molecular models, it’s easy to get overwhelmed by the number of structural groups. Every atom, bond, and group adds to the visual and computational complexity. Sometimes, you just need to focus on the parts of your…
If you’ve ever needed to search for backbone components with a particular atomic makeup in complex molecular models, you know how tedious this process can become. Whether you’re filtering for small ligands, labile functional groups, or large structural chunks, doing…
If you frequently work with complex molecular systems, you probably know how quickly things can get overwhelming. Multiple molecular models, imported data, annotations, and simulations — all layered into a single project. Navigating this spaghetti of atoms and information is…
Running molecular dynamics (MD) simulations is a key task in computational biology, but not everyone has the local computing power to handle them efficiently—especially when dealing with complex systems or long timescales. This is where cloud computing can make a…
One of the most common challenges molecular modelers face when preparing docking simulations is the correct definition of the binding site. Whether you’re performing traditional ligand docking or exploring covalent inhibitors, inaccuracies in binding site selection can significantly affect your…
When working on complex molecular systems, molecular designers and modelers often need to annotate or comment their models using note nodes. These notes can be essential for keeping track of observations, hypotheses, or next steps. However, as projects grow in…
When dealing with complex molecular systems, visual clarity is often one of the most underestimated challenges. Whether you’re inspecting molecular interactions or preparing a figure for publication, it’s easy to end up with a cluttered view filled with overlapping atoms,…
