Working on molecular modeling often involves juggling various complex file formats to streamline workflows. If you’ve ever felt overwhelmed by compatibility issues with software handling, SAMSON offers a versatile solution worth exploring.
A Wide Range of Supported Formats
The integrative molecular design platform, SAMSON, supports a diverse array of file formats for importing and exporting data—ideal for molecular systems, images, animations, and more. Whether you’re dealing with sophisticated molecular structures like CIF, PDB, or XYZ formats or 3D geometries like OBJ or glTF files, SAMSON ensures compatibility with most common formats.
Effortless Data Integration
One of the most significant advantages of SAMSON is its capability to handle both proprietary and standard molecular file types. SAMSON introduces its own SAM (binary) and SAMX (XML) formats that allow users to save extensive data types, including molecular structures, visual models, and simulations. These proprietary formats also allow embedding folders and various external files like scripts and PDFs, aiding in project organization.
Unlock Advanced Molecular Formats
SAMSON also supports widely-used formats, such as:
- PDB or mmCIF: Essential for crystallography and structural biology tasks.
- SDF: Chemical table formats compatible with V2000 and V3000 editions.
- DCD or TRR: Common formats for molecular trajectories, used with simulation software like GROMACS or NAMD.
Are you worried about missing formats? SAMSON Extensions, freely available on the SAMSON Connect platform, can help you expand format handling to meet your project-specific needs. For example, the AutoDock Vina Extended extension enables working with PDBQT files. Additionally, the Adenita extension supports DNA origami formats, such as ADN or JSON.
Streamlined Python Integration
An added perk for developers and advanced users, SAMSON includes a Code Editor that permits opening, editing, and saving Python scripts (PY files). This feature ensures adaptability for researchers interested in scripting custom solutions or automating repetitive tasks.
What If a Format Is Missing?
If a format you’re working with isn’t natively supported in SAMSON, you’re not stuck. The platform lets you contribute by developing custom importers and exporters or submitting a request on the SAMSON Connect Forum.
Simplify your work by exploring the full list of supported formats on the documentation page. This reference guide will help you identify formats, understand compatibility, and get the most out of SAMSON in your molecular modeling journey.
SAMSON and all SAMSON Extensions are free for non-commercial use. Get SAMSON today at SAMSON Connect.