How to Make Molecular Documents Truly Self-Contained

When working on molecular models, sharing and transferring files can often pose challenges. Have you ever found yourself struggling to ensure that your colleagues have all necessary dependencies, scripts, or data to reproduce your work effectively? With SAMSON’s Universal File Embedding feature, you can now create self-contained molecular documents that embed everything you need—ensuring portability and completeness.

What is Universal File Embedding?

Universal File Embedding in SAMSON allows users to embed not just molecular models, but also Python scripts, files, folders, research papers, images, and more within a single file. This feature transforms your molecule-related workflows by making your documents self-contained. Whether you’re embedding scripts for analyses or supplementary data, you can transfer and share your documents without worrying about missing files.

How Can You Use This Feature?

Getting started with embedding files and folders is simple:

  • Drag and drop files or folders directly into SAMSON.
  • Alternatively, navigate via Home > Embed files or Home > Embed folders.

Embed file

A dialog will pop up, asking whether you’d like to embed the selected content. Once embedded, these files and folders become part of the document itself.

Why Is This Feature Useful?

Embedded content ensures that your molecular documents contain everything they need. This is particularly valuable in collaborative research where you might need to share files across teams or computers. Even with complex files like Python apps for machine learning or sets of associated data, these can all travel seamlessly within a single document. As a bonus, SAMSON documents remain portable and self-contained, meaning no additional files are required to run or access the data—offering unmatched convenience.

Sharing is Simplified

Because the files and folders are stored within the SAMSON document, you can transfer them between devices or share them with collaborators without having to worry about any external references. Collaboration becomes easier, reproducibility improves, and you avoid frustrating instances of “missing files.”

Take Your Research Anywhere

Once embedded, you can also use SAMSON Connect to share your file with visibility options—including public, restricted, or private sharing. Combine this with SAMSON’s other features, and you have a robust platform for managing molecular research and collaboration.

Ready to integrate this feature into your workflows? Learn more about loading molecules and managing embedded files in SAMSON by visiting the official SAMSON documentation.

SAMSON and all SAMSON Extensions are free for non-commercial use. Download SAMSON today at SAMSON Connect.

Comments are closed.