As a molecular modeler, you may often need to visually emphasize certain structural elements while de-emphasizing others. The Disappear animation in SAMSON offers a powerful, yet simple way to control the transparency of structural models, meshes, visual models, and labels in your molecular visuals. Let’s dive into how you can use this animation effectively and tailor its properties for your projects.
Why Use the Disappear Animation in Molecular Modeling?
Imagine working on a complex molecular simulation where large structural components obscure smaller but significant features. The Disappear animation lets you progressively make selected nodes transparent, bringing clarity and focus to your visualization.
Opacity adjustments with this animation are particularly useful for animations and creating intuitive molecular presentations. For nodes without a transparency attribute (like individual atoms or bonds), the Disappear effect performs similarly to the “Hide” animation, but if applied to their parent structural models, allows smooth transition effects. Keep this in mind while planning your visualization.
How to Add and Customize the Disappear Animation
Follow these steps to incorporate the Disappear effect into your molecular models:
- Select the nodes you wish to make disappear. These could be structural models, meshes, or even labels.
- Double-click the Disappear animation effect in the Animation panel within SAMSON’s Animator.
The Disappear animation comes with four predefined keyframes:
- Between keyframes 1 and 2, the selected nodes are fully opaque.
- Between keyframes 2 and 3, transparency increases as the nodes progressively disappear.
- By keyframe 4, the nodes are completely transparent.
You can adjust the Easing curve to interpolate parameters between frames, providing a customized fade effect. This enables finer control over how quickly or slowly elements disappear and enhances the visual refinement of your animations. Learn more about easing curves here.
Practical Note for Animators
In older workflows, the Animation menu was used to control effects like Disappear. This has now been replaced with the Animation panel in the latest version of SAMSON. All presentation-related actions can now be easily accessed via the Animator’s controls for simplicity and efficiency.

Conclusion
By using the Disappear animation, you can control the visualization of your molecular designs and draw attention to key areas effortlessly. Pair this tool with other animations like Appear or Flash to create truly engaging presentations. For more details, please visit the official documentation page.
SAMSON and all SAMSON Extensions are free for non-commercial use. To get your copy, visit https://www.samson-connect.net.
