One of the central challenges in molecular modeling and simulation lies in handling dynamic and complex topologies. As molecular systems undergo significant structural changes—such as the breaking and reforming of covalent bonds—traditional interaction models often struggle to provide accuracy and…

As molecular modelers, we often find ourselves struggling to effectively convey complex molecular changes over time. Have you ever wished to highlight the gradual emergence of a molecular structure or transition? With SAMSON’s Appear animation, crafting such visual narratives becomes…

One challenge molecular modelers often face is simulating complex structural changes in molecular systems while keeping control over bond interactions. Enter the Interactive Modeling Universal Force Field (IM-UFF)—an extension to the Universal Force Field (UFF)—that allows you to handle topological…

Pressure equilibration is a critical step in molecular dynamics (MD) simulations, especially when you strive to make your system behave as close to reality as possible. However, balancing density, pressure, and temperature without introducing artifacts can be daunting. Fortunately, the…

Creating smooth, precise animations of molecular models can be a challenge, especially when dealing with vertical camera movements like transitioning between keyframes for a clear view of specific structures. Fortunately, SAMSON’s Pedestal camera animation feature is here to lend a…

For molecular modelers, precision is everything. Whether you’re building a structure, analyzing a molecular assembly, or preparing a simulation setup, the ability to precisely manipulate molecular objects is a key requirement. That’s where SAMSON’s move editors come into play: a…

Molecular modelers often face the challenge of understanding the interactions of molecules over reaction coordinates. One powerful technique to quantify these interactions is calculating the Potential of Mean Force (PMF). Yet, setting up such calculations can be complex and time-consuming…