Have you ever faced challenges integrating diverse tools into your molecular modeling workflow? It can be frustrating to switch between multiple platforms, tools, or scripts to achieve your desired results. The SAMSON Apps ecosystem might be the solution you’ve been waiting for to streamline your molecular modeling activities.
Within the SAMSON platform, apps are versatile extensions that add new functionalities to your workflow. These apps can act as connectors to external executables or web services, integrate pre-existing code into the SAMSON ecosystem, or even enable entirely new features built on the SAMSON API.
Why Apps Matter to Molecular Modelers
Molecular modelers often find themselves juggling between disparate tools to perform simulations, analyze data, or visualize structures. SAMSON helps alleviate this burden by offering a unified interface where you can create, customize, and expand functionality using apps. For example, apps like the “AutoDock Vina Extended App” enable streamlined docking experiments within SAMSON’s environment, without the need to rely on external software for such tasks.
When you install SAMSON, you gain access to a handful of predefined apps to get started. But that’s just the beginning — SAMSON Connect allows you to browse and add more apps, tailoring the platform to your specific needs. Whether it’s computation-heavy modeling, data analysis, or structural visualization, the apps architecture enables you to pick and install only the tools you need, making the platform lightweight and efficient.
How to Access and Extend Your App Library
Getting started with apps in SAMSON is intuitive. Simply head to the Home > Apps section, where you’ll find the pre-installed apps ready to use. When you need additional tools, visit SAMSON Connect to explore and install apps that align with your project requirements.
If you’re eager to push the boundaries further and want to develop custom apps tailored to your unique requirements, SAMSON provides detailed guidelines. You can find resources on generating SAMSON Extensions and consult the Documentation center for advanced tips and technical insights.
Example: Leveraging the “AutoDock Vina Extended App”
One exciting app you can utilize is the AutoDock Vina Extended app, which enhances molecular docking studies. It simplifies docking processes by integrating them into SAMSON, allowing you to focus more on your research and less on technical overhead. Here’s an image showcasing it in action:

By bringing such capabilities into one platform, SAMSON reduces your dependency on multiple interfaces, enabling a smoother and more productive modeling experience.
To learn more about how SAMSON apps can simplify your molecular modeling, visit the official documentation page at SAMSON Apps Documentation.
Note: SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON at https://www.samson-connect.net.
