Efficient molecular modeling often involves repeatedly performing specific tasks, whether it’s selecting specific regions, modifying a visualization, or manipulating representations. These tasks, though essential, can slow down your workflow. This is where SAMSON AI’s /do command comes in, designed to execute actions swiftly and streamline your molecular modeling experience. Let’s dive into how this feature can make your modeling projects smoother and more productive.
What Is the /do Command?
The /do command is SAMSON AI’s way of understanding and executing user actions using natural language. This means you don’t have to hunt through menus or remember complex shortcuts—instead, you can simply tell SAMSON AI what you need, and it performs the action for you.
For instance, you can use the /do command to perform actions such as:
- Zooming to the binding site.
- Selecting molecules or regions of interest and applying different visual models.
- Cleaning up visuals, e.g., by removing water molecules or erasing surfaces.
- Modifying object properties, like changing the color of a surface.
This intuitive command helps you stay focused on your work, reducing the time spent navigating different tools and menus.
Examples of Usage
To demonstrate the usefulness of the /do command, here are some concrete examples of tasks it can handle:
/do zoom to the binding site./do select the ligand and apply a licorice model./do erase all surfaces./do remove water./do select the gaussian surface and make it light blue.
To use these commands, simply open the SAMSON AI assistant through the menu (Interface > Assistant) or with the shortcut Ctrl+0 (on Windows/Linux) or Cmd+0 (on Mac).
See It in Action
Here’s an example of an assistant functioning via /do commands. Interested in how it works? This short video covers using a voice command to perform an action:
Powered by Retrieval-Augmented Agency
What makes this functionality stand out is its underpinning technology: retrieval-augmented agency (RAA). With detailed knowledge about the SAMSON platform and its extensions, the GPT-5-based SAMSON AI can interpret and act on user prompts skillfully. It bridges the gap between a simple virtual assistant and a tool that actively assists with complex modeling tasks.
Conclusion
SAMSON AI’s /do command saves you time and effort, letting you focus more on the science rather than the tools. Whether you’re adjusting visualization parameters or preparing a scene for a presentation, the natural language interface ensures your modeling becomes more streamlined and enjoyable.
Explore more about this feature and its detailed applications at the official documentation page: SAMSON AI Documentation.
Note: SAMSON and all SAMSON Extensions are free for non-commercial use. Download the platform today at SAMSON Connect to explore its full potential.