Molecular modeling can often feel overwhelming, especially when managing multiple molecules, conformations, or datasets in a project. Organizing and visualizing molecular data is crucial for better design and efficient workflows. The Document view in SAMSON offers a simple yet robust solution for molecular modelers to navigate and manipulate data hierarchies efficiently.
Understanding the Document View
The Document view grants you an interactive panel where you can explore the entire hierarchy of your SAMSON document. Here, you’ll find all your molecular nodes and supporting data structured in an intuitive data graph. Whether you’re working with molecules, atoms, residues, Python scripts, or folders of files, you can easily navigate and manage them through this centralized view.
To access the Document view, you can follow Interface > Document view in the menu, or use the keyboard shortcut Ctrl + 1 on Windows/Linux or Cmd + 1 on Mac for quick access. Once open, the panel visually organizes the document’s data graph, making even complex datasets much easier to handle.
Key Features to Simplify Your Workflow
The Document view goes beyond navigation; it also helps streamline operations on your molecular data. Here are some useful features modelers can take advantage of:
- View structure: Get a quick overview of all the nodes and their relationship within the hierarchy.
- Show/hide nodes: Toggle visibility of different parts of your document with just a click. This is especially helpful when handling large molecules or datasets.
- Select nodes: Use the view to select specific nodes you wish to edit or act upon.
- Filter nodes: Apply filters using Node Specification Language or simply search by name to focus on specific components.
- Drag-and-drop actions: Rearrange your molecular structures directly by drag-and-dropping nodes to refine the document structure as per your project needs.
- Node context actions: Right-click on nodes to access specialized actions via the context menu or toolbar.
For users working on interdisciplinary projects, the Document view also enables operations like adding folders for grouping related molecules or embedding files within the SAMSON document for a cohesive project setup. These actions make document management seamless and collaborative workflows more effective.
Switching Between Documents
When balancing different projects simultaneously, SAMSON’s Document view allows you to have multiple documents open at once. However, only one document can be actively displayed in the Document view. Switching between documents is easy: navigate to the Documents list in the top-left corner menu or follow Home > Documents.
You can even use convenient keyboard shortcuts like Ctrl + Tab (or Cmd + Tab on Mac) to cycle through open documents efficiently.
This functionality proves invaluable when working on related molecular systems or when copying data structures between projects.
Learn More
The Document view in SAMSON is a powerful yet easy-to-use feature that helps molecular modelers focus on what truly matters—designing and refining molecular systems. From document hierarchy organization to quick toggling between data points, this tool makes the modeling process more intuitive and efficient.
To explore more about SAMSON’s Document view and its features, refer to the original documentation at https://documentation.samson-connect.net/users/latest/documents/.
Note: SAMSON and all SAMSON Extensions are free for non-commercial use. You can get SAMSON at https://www.samson-connect.net.