For molecular modelers, staying organized while managing multiple simulations and analyses can be challenging. Keeping track of remote cloud computations, retrieving results seamlessly, and sharing findings with colleagues are crucial tasks that can easily become overwhelming without the right tools. Fortunately, SAMSON offers a powerful feature to simplify and optimize this process: the Job Manager.
The Job Manager in SAMSON lets you efficiently handle Cloud-based simulations and analyses, including protein structure predictions using tools like AlphaFold and NVIDIA BioNeMo Services, or molecular dynamics simulations with GROMACS. Here’s how you can use it to streamline your workflows:
Why Use SAMSON’s Job Manager?
The Job Manager acts as the central hub for managing your computations in the Cloud. You can easily:
- Launch simulation or analysis jobs directly from SAMSON for extensions that offer cloud computation functionality.
- Monitor your jobs, pausing or stopping them if needed, and track their progress in real-time.
- Retrieve results directly into SAMSON for post-processing, visualization, or further analysis.
It’s all designed to keep your research flowing smoothly without interruptions or the need to juggle multiple platforms and processes.
Interactive Job Management
Managing jobs with the Job Manager is highly intuitive. Once a job is created in SAMSON, it appears on the interface, where you can:
- View job details: Click on a specific job to see all relevant details displayed conveniently on the right-hand side of the Job Manager.
- Edit job metadata: Rename a job or add notes, and these changes will automatically sync with your SAMSON Connect account.
- Download job files: Need access to your results offline? Simply double-click on a job to download all associated files in one go.


Access File Locations with the Context Menu
Another feature of the Job Manager is the Context menu. With a quick right-click on a job, you gain fast access to:
- Local files already downloaded to your system.
- Files stored remotely in the Cloud.
- Your job view on SAMSON Connect, where you can manage visibility and sharing settings.
This feature saves valuable time by making essential files and actions instantly accessible.

Simplify Sharing and Collaboration
Collaboration is a critical aspect of modern computational research. With SAMSON’s Job Manager, sharing your computational results is straightforward. Whether you’re running protein simulations in AlphaFold, working on molecular dynamics with GROMACS, or employing other tools, the capability to share job files or control who can view them ensures seamless collaboration across teams and projects.
Learn More
The Job Manager is a versatile and indispensable tool that drastically simplifies handling Cloud-based processes in SAMSON. For a deeper dive into how to use it for your simulations and analyses, visit the official documentation here: https://documentation.samson-connect.net/users/latest/cloud/.
SAMSON and all SAMSON Extensions are free for non-commercial use. Download SAMSON at https://www.samson-connect.net.
