For molecular modelers, one of the biggest challenges is bridging the gap between different computational tools, data formats, and specific modeling functionalities. Whether you’re preparing structures, performing simulations, or visualizing molecular systems, you may find yourself juggling many different software components. This not only slows down your workflow—it can introduce inconsistencies and errors.
The SAMSON platform offers a solution through its powerful concept of apps. These apps integrate directly into SAMSON’s environment, allowing users to extend its functionality without leaving the platform. But what exactly are SAMSON apps, and how can they solve common friction points in the daily routine of molecular designers?
What Are SAMSON Apps?
SAMSON apps are modular components that deliver extra features to the SAMSON platform. They can serve a variety of purposes:
- Act as connectors to external software or web services
- Integrate previously developed modeling code
- Introduce entirely new tools using the SAMSON API
In short, an app can automate tasks, add simulation engines, improve structure preparation, offer advanced visualization options, and much more—all without you ever leaving the SAMSON interface.
Why This Matters For You
If you’re using modeling tools like AutoDock, GROMACS, Gaussian or Quantum ESPRESSO, you likely need to move data between programs and format results in specific ways. SAMSON apps can simplify these steps:
- You can use apps like the AutoDock Vina Extended App directly in SAMSON to set up and run docking studies, visualize results, and refine poses.
- You can automate repetitive tasks like hydrogen addition, structure minimization, or solvent shell generation.
- Visualization apps enhance your ability to interpret data effectively, using 3D interaction and real-time measurements.
And because all apps operate within a consistent interface, they help reduce the learning curve and make session management easier.
Where To Find Apps
If you’re using SAMSON, go to Home > Apps to view the pre-installed apps. If you’re looking for more specialized tools, you can visit SAMSON Connect, the platform’s extension hub. Here, you’ll find both official and community-contributed apps that span everything from docking to bioinformatics.
Want To Build Your Own?
For those interested in creating custom solutions, SAMSON makes it possible to develop your own apps using its Extension Generator and Developer Documentation. You can wrap legacy tools you’re already using or invent new workflows tailored to your research. The development process is designed to be accessible, even for scientists with modest programming experience. Learn more in the extension development section.
Conclusion
If you’re looking to streamline your molecular modeling workflow, reduce software fragmentation, and expand what you can do from a single interface, SAMSON apps are worth exploring. They bring powerful features directly to your fingertips—custom-tailored to the needs of molecular scientists.
To learn more and explore available apps, visit the SAMSON Apps documentation page.
SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON at https://www.samson-connect.net.