Integrating complex tools is often a roadblock for molecular modelers. Whether it’s accessing external software, running simulations, or visualizing structure-function relationships, the ecosystem can feel fragmented. You’re forced to juggle between environments — installing plugins, converting file formats, or writing scripts just to bridge capabilities.
SAMSON Apps may be the simplest way to unify workflows in a single, integrated space for molecular design. If you’re unfamiliar with them, here’s what you need to know and how they can help streamline your modeling practice.
What is a SAMSON App?
A SAMSON App is a mini-extension that adds specific functionality to the SAMSON environment. Whether you want to:
- Connect to an external executable to run algorithms,
- Wrap custom scripts or legacy code,
- Integrate a web service to fetch external data,
- Or simply enrich the interface with new simulation or visualization capabilities,
…SAMSON Apps can do that for you — all inside the unified SAMSON workspace.
Where to Find and Install Apps
By default, SAMSON comes with a set of useful apps pre-installed. But the real potential lies in extending the platform with more apps directly from SAMSON Connect. You can find and browse available apps by navigating to Home > Apps from within SAMSON.
From there, it’s easy to search the library, install apps that meet your specific research needs (structure prediction, docking, energy minimization, etc.), and immediately start using them without any configuration hassles.
Example: AutoDock Vina Extended App
A good case study is the AutoDock Vina Extended App, which brings docking capabilities right into SAMSON. Forget switching between tools, re-formatting inputs, or parsing through log files separately. The app provides a streamlined docking workflow entirely integrated with your molecular system in SAMSON.
Can I Build My Own Apps?
Yes. If you’re a developer or want to integrate lab-specific tools or methods, SAMSON allows you to develop your own apps. Refer to the developer documentation about generating SAMSON Extensions for how to get started.
This is especially useful for research groups trying to unify internal code into a shared, user-friendly interface.
Why This Matters
Instead of stitching tools together manually, SAMSON users can expand capabilities through modular apps while maintaining consistency in data, format, and user experience. This saves time and rework — and helps researchers focus on results, not workflows.
To learn more and view the complete documentation, visit the official SAMSON Apps page.
SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON at https://www.samson-connect.net.