Managing complex molecular simulations and predictions can often be a challenging task for molecular modelers. With large datasets, intricate workflows, and the demand for accuracy, keeping everything organized might feel overwhelming. Enter the Job Manager in SAMSON—a tool designed to simplify the way you handle cloud computations.
The Job Manager helps users oversee their computational jobs launched from SAMSON, including advanced tasks such as protein structure prediction (using AlphaFold or NVIDIA BioNeMo services) or running molecular dynamics simulations with GROMACS. Let’s take a closer look at how this tool can benefit you and save time in your modeling workflow.
What Can the Job Manager Do?
The Job Manager is more than just a tracking tool—it acts as a command center for your cloud computations. Below are some key features:
- Create and Execute Jobs: Launch jobs directly from SAMSON via supported extensions.
- Monitor Progress: Keep an eye on the status of your computations (start, pause, stop) in real-time.
- Retrieve Results: Easily access your computational outcomes within SAMSON.
- View and Edit Details: Change job names and add notes, which are automatically synced with your SAMSON Connect account.
Navigating the Job Manager
Accessing the Job Manager is straightforward: navigate to Interface > Job manager. Within the interface, you will find a clean layout that displays job details and status updates in a centralized view.
By clicking on a job, additional details will appear on the right panel, giving you a comprehensive overview. Use this space to edit job names and sync notes effortlessly. For those who need offline access, double-clicking a job allows you to download all associated files, whether they’re cloud-based or already stored locally. Below is a visual overview of how this works:

Quick Access to Context Menus
The Job Manager’s Context menu is another valuable feature. It allows you to access local files, remote files, and even view the job directly on SAMSON Connect. Streamlining your workflows has never been easier, as these shortcuts reduce the time needed to manage computational resources. Explore how to take advantage of this capability below:

Why is Job Management Important?
Efficient job management is crucial for molecular modelers who rely on simulations and predictions for research. By centralizing control via the Job Manager, you can focus on interpreting results without worrying about organizational bottlenecks or missed files. It’s particularly helpful for users dealing with iterative workflows and collaborative projects that require cloud-based resources.
Learn More
To discover how the Job Manager can be seamlessly integrated into your workflow, visit the original documentation at https://documentation.samson-connect.net/users/latest/cloud/.
SAMSON and all SAMSON Extensions are free for non-commercial use. Unlock the full potential of molecular design by downloading it at https://www.samson-connect.net.
