Author: OneAngstrom

If you’ve ever struggled to track specific molecular changes during dynamic simulations, the ‘Follow Atoms’ animation in SAMSON might be just what you need. This smart animation feature lets the camera automatically follow selected atoms during a simulation, maintaining a…

For molecular modelers, clarity and precision in visualization are paramount. Whether you’re presenting data, analyzing models, or creating simulations, the ability to control transparency can make your work vastly more effective. Enter the Disappear animation in SAMSON. This tool allows…

Molecular modeling often demands high computational power, particularly for tasks like protein structure prediction or molecular dynamics simulations. Thankfully, tools like SAMSON now enable cloud-based calculations, offering you powerful resources without the need for expensive local infrastructure. But to harness…

If you’ve ever worked with molecular crystal models, you’ve likely encountered the intricacies of defects and their profound impact on crystal structures. This blog dives into how you can easily visualize and explore defects in diamond crystals using the Crystal…

In molecular modeling, effectively communicating complex structures and processes can often be a major challenge. Whether you're preparing an educational presentation, walking through analysis results, or collaborating with colleagues, clear visualization is key to ensuring that your message is understood.…

Analyzing reaction-coordinate pathways using umbrella sampling can be a challenging task for molecular modelers. Setting up the initial conformations and managing simulations across different windows often feels overwhelming. Fortunately, the GROMACS Wizard in SAMSON offers a streamlined approach to help…

For molecular modelers, achieving fine control over simulation parameters is often vital for obtaining accurate results. The GROMACS Wizard in SAMSON offers a powerful way to apply and customize molecular dynamics parameters (MDP) for simulations. Whether you’re tweaking values to…

Molecular modelers often face the challenge of needing fine control over molecular dynamics (MD) simulations to reflect specific experimental or computational scenarios. Adjusting parameters in MD simulations can feel daunting—but SAMSON’s GROMACS Wizard offers a user-friendly solution for customizing molecular…

When crafting molecular models, visual clarity is often critical. Whether you're preparing a scientific presentation, creating an educational material, or explaining your molecular insights to collaborators, managing the visibility of molecular elements in animations is an essential skill. This blog…