Author: OneAngstrom

As molecular modelers, one common challenge we face is efficiently editing molecular structures while maintaining physical accuracy. This process becomes more complex when dealing with dynamic changes like bond creation, bond breaking, or updates in atom typization. Addressing this, the…

In molecular modeling and animations, effective communication of results and insights heavily relies on how smoothly your models transition between states. If you frequently work on molecular presentations or analysis within SAMSON, you’ll be excited to explore the capabilities of…

When studying molecular design, understanding molecular interactions within a given system can make all the difference. One crucial metric for molecular modelers is the Solvent-Accessible Surface Area (SASA). If you’ve ever struggled to track exposure, compaction, or molecular interface burial…

Molecular modelers know how essential it is to set up accurate input files for production molecular dynamics (MD) simulations. This process, however, can be tedious and time-consuming. What if you could simplify this step and focus more on research insights…

If you've ever felt overwhelmed by the complexity of molecular modeling software, you're not alone. New users often struggle to connect theoretical instructions with real workflows inside advanced platforms. SAMSON helps overcome this learning curve by offering interactive tutorials that…

Have you ever needed to create a molecular animation where structures gradually appear, delivering a professional and captivating presentation of your molecular models? If so, SAMSON’s Appear animation is here to make your work easier and engaging. Understanding how to…

Visualizing and analyzing molecular dynamics can be incredibly enriching but also challenging for modelers when tracking specific movements. Have you ever wanted to keep a close eye on the behavior of particular atoms as they move in your simulations? SAMSON’s…

One of the central challenges molecular modelers face lies in understanding how a molecule’s conformation changes over time. How can you detect transition states, recurring conformations, or structural phases across a molecular trajectory? The RMSD (pairwise) analysis tool in SAMSON’s…