Author: OneAngstrom

Protein-ligand docking is a crucial task for molecular modelers aiming to predict the optimal binding between drug candidates and target proteins. One of the key steps to achieving accurate results is the proper setup of the search domain. Why? Because…

When setting up molecular dynamics simulations, selecting the right simulation box is crucial. The GROMACS Wizard in SAMSON makes it easier to customize and optimize your setup, but how do you choose the perfect box shape? Let’s explore how different…

One common challenge in molecular modeling is efficiently managing the visibility of nodes to focus on specific aspects of your model. Whether you’re preparing a presentation or focusing on dynamic interactions, adjusting node visibility manually can take significant time and…

When working on molecular modeling tasks, examining and editing the properties of molecular nodes is an essential part of the workflow. However, as the complexity of your system grows, so does the number of visible attributes for each selected node.…

For molecular modelers, visualizing complex structures and navigating molecular data efficiently is crucial. The camera functionality in the integrative molecular design platform, SAMSON, provides indispensable tools to make this process seamless. In this guide, we’ll dive into how cameras can…

Creating captivating presentations for molecular modeling can be challenging, especially when communicating complex ideas. One often overlooked element that can elevate a presentation is the background. Strategic use of background images and smooth transitions between frames can significantly improve the…

One of the key challenges in molecular modeling is understanding the motion and interaction between molecular groups. How far do domains move apart? When does a binding site open or close? For researchers grappling with these questions, the Distance analysis…