Author: OneAngstrom

Symmetry plays a crucial role in molecular modeling and design, offering insights into both structure and function. For molecular modelers working on complex biological assemblies like proteins, viral capsids, and nanoparticles, symmetry detection isn’t merely an aesthetic pursuit—it’s a practical…

For molecular modelers exploring protein transitions with the Protein Path Finder app, one critical step that can greatly impact results is defining the sampling box. This step determines the sampling region for active atoms, influencing sampled conformational states and resulting…

In molecular modeling, showcasing specific portions of your system with precision is crucial for presentations, analysis, or publishing results. Yet, achieving a perfectly seamless zoom effect without disturbing target points can often be a challenge. Enter the Zoom Camera animation…

Filtering through a sea of molecular data can be a daunting challenge for molecular modelers, especially when working with complex systems and large selections. However, SAMSON’s Inspector offers an elegant solution: attribute filtering. This feature allows users to efficiently highlight…

For molecular modelers dealing with vast datasets or numerous simulations, configuring workflows for each system or conformation can quickly become a tedious and time-consuming task. If you’ve ever wished for a smarter solution to effortlessly handle multiple simulations without repetitive…

For molecular modelers, managing complex simulations—whether it’s protein structure prediction or molecular dynamics—is a critical aspect of their workflow. However, dealing with large datasets, ensuring cloud resources are properly utilized, and retrieving results efficiently can turn into a cumbersome process.…

Preparing molecular systems for simulations has long been a complex and time-intensive task. For molecular modelers, ensuring every element of a system is accounted for—from defining the simulation box to solvating the structure—can feel overwhelming. The GROMACS Wizard in SAMSON…

Molecular modeling often involves visualizing and analyzing intricate structures and movements of molecules. A particularly common challenge is explaining or presenting how molecular components separate or disassemble—whether it’s for educational purposes, hypothesis testing, or presentations. Fortunately, SAMSON’s Disassemble animation offers…