OneAngstrom – Page 65

Need an Older Version of SAMSON? Here’s How to Install It

Researchers and modelers often face a common challenge: compatibility. Whether you’re working with a specific SAMSON Extension, following a reproducible workflow, or using a system with legacy software constraints, sometimes the latest version of SAMSON is not the best fit.…

Save Time by Starting from a Molecule You Already Have

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When you’re working with molecular design tools, one of the most frequent and sometimes frustrating tasks is setting up your initial molecule just to start with a new technique or analysis. Whether you’re exploring new analogs or experimenting with substitutions,…

Making SAMSON Work Your Way: A Guide to Interface Customization

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For molecular modelers juggling complex systems and workflows, having a workspace that truly supports your thinking is more than a convenience — it’s a necessity. SAMSON, the integrative molecular design platform, offers a powerful solution: a fully customizable interface that…

How to Quickly Find Segments with Specific Properties in Molecular Models

OneAngstrom

If you’ve ever worked on large molecular systems in SAMSON and struggled to filter or select specific segments based on structural or visual attributes, you’re not alone. Whether you’re analyzing simulations or preparing publication-ready visuals, efficiently narrowing down large systems…

Can’t See Your Molecule? Understanding Why Nodes Disappear in SAMSON

OneAngstrom

When working with complex molecular systems in SAMSON, it’s not uncommon to run into the issue of nodes—atoms, molecules, bonds—seemingly vanishing from view. But are they really gone? Often, the problem isn’t in the data itself, but how that data…

Keeping Your Molecule Centered While Moving Upward: The Pedestal Camera Trick

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When preparing animations for molecular presentations, clarity of motion and point of view are crucial. Whether you’re highlighting structural changes in a protein or showing a drug docking process, a smooth, coherent camera move can make all the difference. If…

Stuck in a Workflow? SAMSON’s Built-in Interactive Tutorials Might Help

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One common hurdle for molecular modelers—especially those new to a platform—is the steep learning curve when trying to understand software workflows. Even experienced users may occasionally find it time-consuming to recall how to set up a particular simulation or visualization.…

Better Force Field Results? Try Customizing UFF Typization in SAMSON

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When it comes to molecular simulations, force fields are essential: they help define how atoms interact and how the system behaves. The Universal Force Field (UFF) is popular for its ability to support a broad range of elements. But molecular…

Fast Selection Switching with Quick Groups in SAMSON

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When working with complex molecular systems, switching efficiently between different areas of interest is crucial. Whether you’re analyzing binding sites, separating receptor and ligand views, or toggling between multiple regions during a design session, spending time reselecting elements can quickly…

Running Molecular Dynamics Simulations in the Cloud with GROMACS Wizard

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Setting up and running molecular dynamics (MD) simulations with GROMACS can be demanding in terms of both time and computational resources. If you’re working with large systems, using a laptop or a local workstation might not be efficient enough. Fortunately,…