Author: OneAngstrom

For molecular modelers, achieving precision in structural refinement can be a recurring challenge, particularly when focusing on specific parts of a molecule while leaving other areas untouched. SAMSON, the integrative molecular design platform, provides an effective solution for such cases…

For molecular modelers, understanding the most visited regions in complex coordinate spaces can be a challenging task. The 2D density map feature in SAMSON’s Path Analyzer offers a powerful way to uncover patterns in your data by analyzing the density…

Analyzing the movement of atoms during molecular simulations is essential for understanding dynamic processes such as ligand binding/unbinding, reaction mechanisms, or conformational changes in biomolecules. However, exporting specific atom trajectories for further analysis can be a challenging task for molecular…

As a molecular modeler, you’ve likely faced the challenge of effectively communicating your findings to others. Whether it’s preparing a presentation, publishing a paper, or simply sharing a visualization with colleagues, capturing high-quality images of molecular systems is critical. In…

For molecular modelers, selecting specific groups of atoms based on complex criteria can often be a time-consuming and error-prone task. Thankfully, SAMSON provides a sophisticated yet accessible solution for this common pain point: the Atoms Selector Extension. With this tool,…

For anyone working in the field of molecular modeling or DNA nanotechnology, exporting precise DNA designs for simulations is a frequent challenge. Preparing models in the right format, ensuring compatibility with downstream tools like oxDNA, and avoiding rework caused by…

Molecular modelers often face the challenge of building a lipid layer around a protein to create a realistic membrane-like environment for simulations. This can be time-consuming and prone to errors if done manually. Fortunately, the Molecular Box Builder, available in…

Effortless Customization of the SAMSON Interface For molecular modelers, having an interface tailored to a personal workflow can make all the difference. If you’ve found yourself hunting for frequently used features or wishing the layout of your tools were more…