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Tracking the motion of specific parts of a molecular system during simulations can be a daunting task. Whether you’re studying a molecular binding process, structural changes, or other dynamic events, losing sight of the most crucial atoms can hinder your…

Molecular modeling often requires precise control over how groups of atoms or meshes are rearranged within simulations. For researchers and professionals in structural biology or computational chemistry, this can be a daunting task, especially when dealing with docked configurations. The…

When working on complex molecular models, even the most experienced modelers encounter moments of hesitation—was that the right adjustment? Can I roll back this step without losing progress? SAMSON, the integrative molecular design platform, alleviates these concerns with its robust…

One common challenge for molecular modelers is achieving a realistic visual depth in their molecular scenes. When working with intricate structures and complex data, it can sometimes be difficult to clearly distinguish the different regions of a molecule. This is…

For molecular modelers immersing themselves in complex systems, a seamless way to enhance visual presentation and analysis is often crucial. One frequent challenge is achieving a smooth and precise zooming effect on specific areas of interest, ensuring critical details are…

Molecular modelers often face the challenge of accurately extracting atomic coordinates along specific paths to prepare input files for further analysis, such as reaction coordinate studies or free energy calculations. If you’ve ever struggled with exporting these trajectories or couldn’t…

For molecular modelers, understanding how molecules interact with their environment is critical. One particularly important aspect is the solvent-accessible surface area (SASA), which reflects how much of a molecule’s surface is accessible to solvent. This can reveal important details about…