Category: Uncategorized
Avoiding Simulation Instability: A Quick Guide to NVT Equilibration in GROMACS Wizard
A Smooth Zoom with a Twist: Getting Started with the Dolly Camera Animation in SAMSON
Visualizing Ligand Unbinding with Pathlines in SAMSON
Tracking how ligands unbind from biomolecules is critical for understanding molecular interactions — but visualizing this process across a simulation trajectory can be tricky. A common struggle among molecular modelers is identifying and presenting meaningful movement without overwhelming the viewer…
From Concept to CNT: A Simple Way to Build Carbon Nanotubes in 3D
When modeling at the nanoscale, researchers, educators, and engineers often need to quickly generate accurate carbon nanotube (CNT) structures. Whether you’re simulating molecular transport, designing nanoelectromechanical systems, or visualizing nanoscale materials, building CNTs manually can become repetitive and error-prone. The…
Controlling Visibility in Molecular Presentations Without Tweaking Transparency
Molecular animations can quickly become overwhelming when dealing with complex structures, especially when multiple elements appear and disappear during a presentation or simulation. A frequent challenge for molecular modelers is ensuring clarity in dynamic visualizations: how do you focus attention…
Using Your Own GROMACS in SAMSON Wizard: Why and How
Tracking Moving Molecules: Let the Camera Follow Your Atoms Automatically
Quickly identify groups of atoms in SAMSON using selection attributes
Molecular modelers often work with very complex systems, frequently involving large biomolecules, materials, or supramolecular assemblies. Navigating these models efficiently often depends on the ability to select and manipulate parts of the system based on their structural or logical organization.…
Adding a Lipid Layer Around a Protein without Headaches
Avoiding Simulation Instability: A Quick Guide to NVT Equilibration in GROMACS Wizard
A Smooth Zoom with a Twist: Getting Started with the Dolly Camera Animation in SAMSON
Visualizing Ligand Unbinding with Pathlines in SAMSON
Tracking how ligands unbind from biomolecules is critical for understanding molecular interactions — but visualizing this process across a simulation trajectory can be tricky. A common struggle among molecular modelers is identifying and presenting meaningful movement without overwhelming the viewer…
From Concept to CNT: A Simple Way to Build Carbon Nanotubes in 3D
When modeling at the nanoscale, researchers, educators, and engineers often need to quickly generate accurate carbon nanotube (CNT) structures. Whether you’re simulating molecular transport, designing nanoelectromechanical systems, or visualizing nanoscale materials, building CNTs manually can become repetitive and error-prone. The…
Controlling Visibility in Molecular Presentations Without Tweaking Transparency
Molecular animations can quickly become overwhelming when dealing with complex structures, especially when multiple elements appear and disappear during a presentation or simulation. A frequent challenge for molecular modelers is ensuring clarity in dynamic visualizations: how do you focus attention…
Using Your Own GROMACS in SAMSON Wizard: Why and How
Tracking Moving Molecules: Let the Camera Follow Your Atoms Automatically
Quickly identify groups of atoms in SAMSON using selection attributes
Molecular modelers often work with very complex systems, frequently involving large biomolecules, materials, or supramolecular assemblies. Navigating these models efficiently often depends on the ability to select and manipulate parts of the system based on their structural or logical organization.…
