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How to Select Atoms with Precision in SAMSON Using Mathematical Expressions

When working with large molecular structures, molecular modelers often face the challenge of isolating specific atoms for inspection or modification. Manually selecting these atoms can be tedious and error-prone—especially in systems with thousands or millions of atoms like biomolecular complexes,…

Quickly Filter Visible Molecular Backbones in SAMSON

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When working on large and complex molecular systems, it’s easy to get overwhelmed by the sheer number of components displayed in the viewport. You might find yourself hunting for just the visible backbones of a protein, or trying to select…

Quickly Filter File Nodes in SAMSON with These 3 Attributes

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When working on complex molecular models, especially in large systems with multiple datasets, managing and filtering different nodes in your project becomes crucial. Many users of the SAMSON molecular design platform need a fast way to query and act on…

Making Your Molecular Projects Portable with File Embedding in SAMSON

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Working with molecular models often means juggling several types of files: structures, scripts, datasets, documents, and even code. Anyone who has ever transferred a molecular project from one machine to another—or tried to share it with a collaborator—knows how easy…

Creating Attention-Grabbing Molecular Transitions with Flash Animation in SAMSON

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When creating molecular animations, effectively guiding your viewer’s attention is a major challenge. Whether you’re preparing an educational video, a presentation for colleagues, or a publication-grade animation, cleanly controlling when molecular systems appear and disappear can make your message clearer.…

Visualizing Ligand Motions: Exporting Unbinding Pathways from SAMSON

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Molecular modelers often spend a considerable amount of time simulating ligand unbinding pathways in protein-ligand systems. However, after the hard work of generating results, exporting and visualizing the actual ligand motions can still be confusing or time-consuming. If you’ve been…

Precise Atom Selection with Mathematical Expressions in SAMSON

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In molecular modeling, selecting the right atoms can be crucial. Whether you’re preparing a simulation system, modifying a structure, or simply visualizing specific regions, being able to define custom selection rules can save both time and effort. If you’ve ever…

From DNA Design to Simulation: Exporting Your Work with Adenita

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Designing DNA nanostructures is a meticulous process that often doesn’t stop at the visual modeling stage. Many molecular modelers and nanobiotechnologists also need to export their designs for use in simulations or experimental protocols. That’s why understanding how to export…

A Quick Guide to Discrete Color Palettes in Molecular Visualization

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Color is more than aesthetics in molecular modeling—it’s a visual language. Whether you’re distinguishing between protein chains, highlighting functional groups, or visualizing molecular dynamics, choosing the right color palette has a practical impact. However, many molecular modelers struggle with inconsistent…

Why You Should Pause Your Molecular Animations (and How to Do It in SAMSON)

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If you’re building molecular animations to explain mechanisms, present your results, or simply create more engaging scientific visualizations, one simple but often overlooked detail can make a big difference: properly timed pauses 🎬. In SAMSON, the integrative molecular design platform,…