Category: Uncategorized

For molecular modelers, organizing and managing complex datasets can be a daunting task. SAMSON offers a powerful solution through its Document View, enabling users to visualize, organize, and manipulate molecular hierarchies with ease. This post dives into how the Document…

Molecular modeling can often seem like a complex puzzle with many pieces scattered across diverse tools, scripts, workflows, and computational platforms. For modelers and researchers, the challenge lies in streamlining this process without losing precision. Enter SAMSON Apps, an integrative…

For molecular modelers, transforming 2D chemical representations like SMILES (Simplified Molecular Input Line Entry System) into 3D structures can often be a critical step in exploring molecular properties, docking studies, or preparing for simulations. The process is often riddled with…

Molecular modelers often face challenges when managing and altering vast arrays of molecular data. This can become overwhelming when working with groups of atoms, residues, or bonds. SAMSON, the integrative molecular design platform, offers a useful tool to simplify this…

Molecular modelers often face the challenge of converting 2D molecular representations into 3D-ready structures for simulations, docking, and analysis. This process can be time-consuming, particularly when handling extensive SMILES datasets. Fortunately, SAMSON’s SMILES Manager, powered by RDKit, offers a streamlined…

For molecular modelers, ensuring protein structures are accurate and free from conformational strain is a crucial step before running simulations or performing analyses. One common challenge in protein modeling is identifying and correcting residues that occupy unfavorable backbone conformations. This…

Keeping a consistent viewpoint during molecular visualizations can be challenging, especially when working with large and complex simulation datasets. Imagine carefully setting up the ideal camera angle, only to lose it due to unintended movements or adjustments. For molecular modelers,…

Creating compelling molecular animations can significantly aid communication and understanding in molecular modeling. However, ensuring that your audience pays attention to critical aspects of your presentation is not always easy. This is where the Pause animation in SAMSON can make…

Cleaning up a molecular system before running simulations is a critical step for ensuring reliable results. One common issue for molecular modelers involves deciding what to do with the crystal waters found in protein structures. While some waters are essential…