Molecular modelers often face the challenge of presenting their work effectively, where controlling the visibility of specific elements in animations can be crucial. Whether for presentations, tutorials, or publications, you might want to highlight certain molecular features at key moments. This is where SAMSON’s Flash animation can offer an elegant solution. Let’s explore how you can use this feature to make your animations more purposeful and compelling.
Why Use the Flash Animation?
The Flash animation allows nodes to appear at certain keyframes and disappear at others, offering a clear and clean way to draw attention to specific molecular structures or details. This is achieved through visibility changes rather than transparency, ensuring a sharper and more professional-looking animation.
Adding the Flash Animation in Three Steps
Here is a simple workflow to get started with Flash animations:
- Select the nodes: Identify the molecular parts that you want to show or hide during your animation. For example, you might toggle between ligand visibility and other molecular components.
- Apply the Flash effect: In the Animation Panel of SAMSON’s Animator, double-click on the Flash animation effect. This action adds the animation to your selected nodes.
- Adjust the keyframes: The Flash animation consists of four keyframes:
- Between keyframes 1 and 2, the selected nodes stay hidden.
- At keyframe 2, the nodes become visible and remain visible until keyframe 3.
- At keyframe 3, the nodes become hidden again and remain so until keyframe 4.
Move these keyframes in your animation timeline to set the desired timing.
Feel free to experiment with these keyframes to create smooth, seamless transitions in your animations, keeping your audience focused on the aspects you wish to emphasize.
Fine-Tuning Your Animation
For a professional finish, adjust how the parameters between the keyframes are interpolated. You can do this by modifying the Easing curve. This feature allows you to control the speed of visibility transitions, creating visually pleasing effects that match the rhythm of your presentation.

Example in Action
To get a clearer picture, watch this example of the Flash animation in SAMSON. It demonstrates how nodes can appear and disappear cleanly over the timeline of an animation:

Conclusion
With the Flash animation, you can ensure your molecular designs transfer effectively from your screen to your audience’s understanding. Whether you’re preparing an impactful presentation or working with collaborative models, this feature provides you with both flexibility and clarity.
To learn more, visit the Flash animation documentation page: https://documentation.samson-connect.net/users/latest/animations/flash/
SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON from https://www.samson-connect.net.
