Embedding Python Scripts and Files in SAMSON Documents

Molecular modelers often need a unified way to structure and store not only molecular models but also project-related files, scripts, and data. Imagine transferring an entire simulation project—complete with Python scripts, images, and research papers—in a single, self-contained document. This is precisely what SAMSON’s Universal File Embedding offers.

Why Embed Files in Your SAMSON Documents?

Embedded files and folders ensure that all supporting materials for your molecular modeling projects remain consolidated. By dragging and dropping files into SAMSON, or via menu options, you can embed:

  • Python scripts for automations or machine learning-based analysis
  • Images and visuals for presentations
  • Research papers and datasets for reference
  • Entire folders to keep things organized

This feature simplifies project sharing and collaboration, as embedded documents can be easily transferred between computers while retaining all necessary files.

How to Embed Files and Folders in SAMSON

The process of embedding is straightforward:

  • Drag and Drop: Drag files or folders onto the SAMSON interface. A dialog box will prompt whether you want to embed them in the active document.
  • Alternatively, go to Home > Embed files or Home > Embed folders.

Embed file

Embedding files makes the document self-contained. Whether you are working solo or in a team, this self-containment ensures compatibility and easy project sharing without having to separately manage external files.

Transfer, Share, and Collaborate

Once files are embedded, they become part of the SAMSON document, enabling you to:

  • Share: Seamlessly share your project with peers via SAMSON Connect without worrying about missing files.
  • Transfer: Move the document between workstations while preserving all embedded data.
  • Collaborate: Ensure all collaborators work with the same scripts and resources, avoiding version mismatches.

This makes SAMSON not just a platform for molecular modeling but also a robust environment for managing and executing complex projects.

Ready to Get Started?

Whether you work with Python scripts, research data, or structured project folders, embedding in SAMSON is a simple yet powerful way to organize and share your molecular modeling projects. To explore further details and learn more about the Universal File Embedding feature, visit the original SAMSON documentation page.

SAMSON and all SAMSON Extensions are free for non-commercial use. You can download SAMSON at SAMSON Connect.

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