Mastering Simulate Animations for Constrained Molecular Simulations.

One recurring challenge for molecular modelers is achieving precise control during simulations, especially when simulating complex nanosystems where certain constraints or specific movements need to be maintained. Enter the Simulate animation in SAMSON, a powerful feature that facilitates constrained molecular…

Mastering Structural Group Attributes in SAMSON’s NSL

Molecular modelers often encounter challenges when querying complex molecular structures efficiently. The Node Specification Language (NSL) in SAMSON provides a robust solution, especially with its structuralGroup attribute space. In this post, we will explore how structural group attributes can help…

Streamlining Molecular Repositioning in SAMSON

One of the most frequent tasks in molecular modeling is repositioning structures. Whether you are aligning fragments, organizing a complex molecular arrangement, or preparing a system for simulation, precise repositioning forms the basis of effective molecular design workflows. Thankfully, SAMSON…

Master Vertical Movements with the Pedestal Camera Animation

When working on molecular modeling, precise visualization is crucial. A frequent challenge is the need to observe a molecular system from different perspectives while maintaining focus on vertical movements. Fortunately, SAMSON offers a perfect tool for this: the Pedestal camera…

Effortless Batch Preparation of Protein Structures

Preparing multiple protein structures can be a daunting task, especially when you need to clean up, validate, and fix numerous files all at once. Fortunately, SAMSON offers a practical solution with its Batch Protein Prepare extension, letting you streamline the…