Protein sequence alignment is a critical step for molecular modelers solving a variety of structural and functional questions. However, aligning sequences and comparing structures often involve juggling between different tools and formats, which can be time-consuming and error-prone. SAMSON’s Protein…
As a molecular modeler, presenting your work effectively is just as important as the technical rigor of simulations. Whether you’re demonstrating molecular docking, pathways, or structural transformations, animation can help you communicate complex information persuasively and clearly. Fortunately, SAMSON –…
For molecular modelers who want to customize and expand their software capabilities, managing extensions can sometimes feel overwhelming. SAMSON makes this process significantly easier with its Marketplace and built-in extension management tools. Here’s a step-by-step guide to understand and maximize…
One of the challenges molecular modelers face is predicting accurate biomolecular structures, especially for proteins that lack experimental structures. With the Biomolecular Structure Prediction extension in SAMSON, the process of leveraging advanced prediction tools like AlphaFold-2 becomes seamless and highly…
Molecular modeling often involves working with complex structures and datasets. As a modeler, efficiently specifying and interacting with groups of nodes—a universal concept in molecular design—can be challenging. Fortunately, SAMSON’s integrative platform addresses this with its Node Specification Language (NSL).…
