Molecular modeling often requires exploring how biomolecules like proteins, RNA, or DNA move and adapt, particularly when studying dynamic interactions like ligand binding or conformational changes. Such investigations can be computationally intensive, but with the Normal Modes Advanced (NMA) module…

For many molecular modelers, building complex molecular simulations from scratch can feel overwhelming. Especially when it comes to coarse-grained (CG) systems, ensuring proper setup, solvation, and ionization often becomes a bottleneck. The GROMACS Wizard in the SAMSON platform offers a…

In molecular modeling, creating clear and visually engaging presentations is essential for communicating complex structures and processes effectively. A common challenge is managing the visibility of specific components within your model, particularly when you need them to disappear at key…

For molecular modelers, creating accurate and visually compelling animations often requires precise control over atomic positions. Have you ever wanted certain atoms or groups of particles to remain completely fixed during transitions between animation frames? The Hold atoms feature in…

For molecular modelers, one of the most pressing challenges is streamlining repetitive tasks, automating complex workflows, and extending software functionalities to fit the specific needs of a project. SAMSON’s Python Console is an indispensable feature designed to address these challenges,…

Creating captivating molecular presentations often involves more than just showing data and models—it's also about delivering a visually engaging experience. One way to elevate your molecular presentations is by mastering the art of smooth background transitions. This blog post explains…

When setting up molecular docking, one challenge researchers often face is accurately accounting for the flexibility of molecular bonds. Do you make every bond flexible? How do you balance docking accuracy and computational time? If you’ve asked yourself these questions,…

One of the recurring challenges in molecular modeling is simulating interactions between molecular chains. A prime example is center-of-mass (COM) pulling, an essential method for studying molecular dynamics when exploring pulling forces and changes in molecular internal structures. Setting up…

Molecular modeling often requires specialized tools for different tasks, from simulating molecular dynamics to analyzing complex structures. However, finding and integrating these tools can sometimes be challenging for researchers and developers. This is where the SAMSON Extensions Marketplace comes in…