Undocking molecular components within complex structures is a critical task for molecular modelers. Whether you are analyzing receptor-ligand interactions or refining docking simulations, the Undock animation in SAMSON simplifies the process of visualizing and animating molecular undocking with clarity and…

For molecular modelers, one of the key challenges is effectively showcasing complex molecular processes, interactions, or assemblies to a broad audience. Whether sharing results with colleagues, creating presentations for conferences, or teaching molecular concepts, clear, visually engaging animations are essential.…

When working on molecular simulations, choosing the right unit cell shape can significantly impact efficiency and accuracy. For users of the GROMACS Wizard in the SAMSON platform, understanding the available unit cell shapes and their applications is essential. This blog…

Molecular modelers often require a precise way to analyze atomic motion, be it for reaction coordinate studies, free energy profiling, or understanding ligand pathways in complex systems. Exporting atom trajectories along well-defined paths becomes essential in these scenarios, yet many…

For molecular modelers, tracking specific atom groups during dynamic simulations can often be a tedious task. Staying focused on a moving target while maintaining consistent visualization poses significant challenges, especially when attempting to pinpoint areas of interest within a larger…

For molecular modelers, software usability is often the difference between streamlined workflows and frustrating inefficiencies. Have you ever found yourself wishing the tools you rely on could be rearranged to better suit your needs? If so, the customizable interface of…

If you’re a molecular modeler, you know that precise control over molecular dynamics parameters can make or break your simulations. One challenge is finding a streamlined way to apply and manage custom parameters for diverse simulation steps—be it energy minimization,…

Creating accurate and visually engaging molecular animations can be an incredible tool for molecular modellers, whether for presentations, research, or teaching. Yet, the technicalities of adding or editing keyframes can feel daunting. Thankfully, SAMSON’s Move atoms feature simplifies this task,…

Molecular modelers rely heavily on visualizing structural details clearly and effectively. Whether you’re analyzing protein-ligand interactions or exploring massive molecular assemblies, choosing the right color schemes is critical for interpretation and communication. Sometimes, though, default color palettes might not align…