When preparing molecular presentations or animations, simplicity is often key to effectively communicate insights. However, many molecular modelers face the challenge of managing the visibility of molecular nodes during a presentation. This is where the ‘Hide’ animation in SAMSON can make all the difference.
The ‘Hide’ animation allows you to make specific molecular nodes disappear at a designated keyframe and remain hidden until the end of the sequence. Contrary to altering transparency levels, this approach changes the visibility of nodes, offering a cleaner and more intuitive presentation. Essentially, the ‘Hide’ animation combines two common animations—’Shown’ and ‘Hidden’—into one simple process, saving you time and effort.
How to Add the ‘Hide’ Animation
Implementing the ‘Hide’ animation is straightforward. Here’s how you can do it step-by-step for seamless molecular design:
- Choose Your Nodes: Begin by selecting the molecular nodes you’d like to hide during the animation sequence. This can include specific atoms, molecules, or larger structural components.
- Add the Animation: Open the Animation panel within SAMSON’s Animator. Double-click on the ‘Hide’ animation effect to apply it to the selected nodes. This will automatically create three keyframes in your timeline.
- Understand the Keyframes: The ‘Hide’ animation operates across three keyframes:
- Between keyframes 1 and 2, the nodes remain visible.
- At keyframe 2, the nodes disappear.
- Between keyframes 2 and 3, the nodes stay hidden.
- Adjust as Needed: You can move the keyframes to fit your specific timeline, giving you control over when and how long the nodes remain hidden.
For a visual walkthrough, here’s an example of the ‘Hide’ animation in action:

Additional Notes for a Better Workflow
It’s important to note that the easing curve of the animation can be customized to modify how the transitions between frames are interpolated. You can adjust the easing settings in the animation parameters to ensure the ‘Hide’ effect aligns perfectly with your presentation’s pacing.
Moreover, while older versions of SAMSON utilized an Animation menu, you can now access all animations—including ‘Hide’—directly from the Animation panel for a more streamlined experience. This ensures you have all the necessary tools in one place for efficient molecular modeling.
Conclusion
With the ‘Hide’ animation, managing the visibility of molecular components during a presentation becomes much easier. Whether you’re showcasing a protein-ligand interaction, highlighting specific regions of interest, or cleaning up complex visuals, this feature ensures that your animations are both professional and focused.
To learn more about the ‘Hide’ animation and other related effects, visit the official documentation page here: https://documentation.samson-connect.net/users/latest/animations/hide/
SAMSON and all SAMSON Extensions are free for non-commercial use. You can get SAMSON at https://www.samson-connect.net.
