Author: OneAngstrom

When working with molecular models, clarity is key. Whether you’re preparing figures for a publication, presentations, or just trying to keep track of complex systems, proper labeling of atoms, residues, or molecules can be the difference between insight and confusion.…

Launching molecular dynamics simulations can be resource-intensive, particularly for large systems. If you’ve ever struggled with local hardware limitations when using GROMACS, you’re not alone. A common frustration among molecular modelers is the inability to test a system before committing…

In molecular modeling presentations, clarity is key. Whether you’re showing structural rearrangements, highlighting specific regions, or simplifying a complex scene, hiding certain parts of your molecular model can greatly help your audience stay focused. But removing components abruptly can be…

Preparing molecular systems for simulations typically involves several steps, and one of the persistent pain points for many molecular modelers is selecting the correct input files at each stage—especially during equilibration. Do you find yourself digging through folders, unsure which…

Molecular animations can turn complex scientific data into clear visual narratives. Whether you’re assembling molecular systems, explaining docking mechanisms, or preparing a captivating presentation for a lecture or a publication, camera motion is what brings your story to life. But…

Presenting complex molecular mechanisms in a clear and engaging way can be difficult, especially when your model begins as a disordered set of atoms or fragments. One common pain point molecular modelers face is how to visually demonstrate how molecular…

When working in molecular modeling, it’s not uncommon to bump into limitations: maybe you want to use a specialized algorithm you published, or add support for a new file format, or even create a visualization style that better reflects your…