Author: OneAngstrom

Visualizing molecular motion is essential for understanding a system’s behavior, especially when studying localized changes or tracking specific atoms within a simulation. However, one of the most common challenges when reviewing trajectories is keeping the selected atoms centered in view.…

Creating scientific animations that are both informative and visually clear can present unexpected challenges, especially when depicting molecular structures that evolve or transition over time. One frequent issue molecular modelers face is how to gradually remove atoms or bonds in…

When analyzing molecular motion, one common frustration is losing sight of the atoms you’re most interested in. Whether you’re studying protein folding, ligand binding, or complex conformational changes, it’s easy for the action to drift out of view when the…

Designing molecular analogues is a common approach in medicinal chemistry to explore structure-activity relationships and optimize compounds. However, scanning and editing molecular substructures manually can be both slow and error-prone. If you’re looking for a way to streamline analogue generation…

When studying ligand unbinding in molecular systems, simply knowing the start and end states is often not enough. The path a ligand takes while moving from its bound state to an unbound state can provide useful insights into binding site…

One common task in molecular modeling is to analyze or present the evolution of a molecular system over time. Whether you’re watching conformational changes, simulating ligand binding, or just tracking a molecular mechanism, it’s important to be able to visualize…

When modeling complex molecular systems, selecting specific atoms—even in large structures—can become a repetitive and error-prone task. Whether you’re visualizing a nano-structure or preparing data for simulation, quickly defining regions of interest is often critical. Yet doing this manually using…

Communicating molecular behaviors effectively is a key challenge for many researchers, educators, and students working with molecular models. Static images can only convey so much, leaving out crucial aspects like movement, spatial orientation, and dynamic interactions. That’s where animations can…

Moving molecular structures accurately is a critical part of molecular modeling. Whether you’re fine-tuning the positioning of fragments, arranging assemblies, or preparing systems for simulations, you often need to rotate and translate atoms with surgical precision. This is where SAMSON’s…

When creating molecular animations, especially those used to present molecular assemblies or docking processes, a common challenge arises: how to make sure certain atoms or molecular components stay fixed while others move? Let’s say you’re animating a ligand docking into…