When creating animations of molecular systems, you’re often focused on illustrating detailed transitions—like conformational changes, ligand docking, or energy minimizations. But there’s a subtle issue that many researchers encounter: the camera viewpoint can drift between frames unintentionally, especially if no…
Writing Python scripts for molecular modeling often involves switching between documentation, coding environments, and visualization tools. For researchers and students working with complex simulations, simple tasks—like transforming atoms or building interfaces—can become time-consuming due to repetitive coding and context switching.…
When modeling molecules, filtering atoms by chemical properties or structural features is an everyday task. Yet, for many molecular modelers, selecting atoms by geometry—like tetrahedral or octahedral configuration—can still be a tedious, time-consuming process, especially when working with large systems.…
When preparing molecular systems for simulation, clean geometry isn’t optional—it’s essential. Poor atomic arrangements can lead to unrealistic behavior, convergence failures, or wasted compute time. That’s why optimizing geometries before launching simulations should be part of every molecular modeler’s workflow.…
When preparing molecular presentations, researchers often focus heavily on the scientific content—molecular structures, simulation results, docking poses—and understandably so. However, the presentation layer of that information is also crucial. Transitions that appear abrupt or distracting can reduce clarity or even…
Designing DNA nanostructures often involves more than just creating structures — it requires modifying them. Whether you’re untangling a strand, changing connections, or adjusting geometry, manually handling these edits can quickly become error-prone and tedious. Fortunately, Adenita, an extension of…
