Author: OneAngstrom

Protein modeling often requires understanding how a molecule transitions between two states. Whether you’re studying conformational changes, building realistic reaction coordinates for free energy simulations, or analyzing transition states, crafting a continuous, biologically meaningful path can be a daunting task.…

For molecular modelers, managing and visualizing structures effectively can be a significant challenge, especially when working with complex biomolecular models. One particularly useful feature of SAMSON is the Sequence View tool, which bridges the gap between sequence and spatial representation,…

Molecular modeling often involves complex structures, and presenting them effectively can be a real challenge. Whether you’re sharing insights about molecular dynamics or visually exploring structural details, clarity is key. The Disassemble animation in SAMSON provides a straightforward way to…

For molecular modelers, creating custom polymers using specific chemical compositions can often feel like a daunting task. In particular, managing monomer units, ensuring proper connections, and avoiding structural clashes tend to be challenging aspects of the workflow. SAMSON’s Polymer Builder…

For molecular modelers and researchers, automating routine tasks or creating precise, customized workflows can be critical for efficiency and creativity. But scripting these processes can often feel daunting, requiring domain knowledge and time. What if your molecular design platform could…

Molecular modeling often requires workflows that go beyond the functionality available in a default software installation. Researchers and modelers are consistently looking for tools that can facilitate more complex simulations, enhance visualizations, or provide domain-specific solutions. If you find yourself…

Molecular modeling often involves dealing with a multitude of tools and features to design, analyze, and simulate molecular systems. For many molecular modelers, the challenge lies in having flexibility while keeping workflows streamlined. This is where SAMSON Extensions come into…

Molecular modelers often face the challenge of refining specific molecules or molecular regions within large and complex systems. Minimizing an entire system when you only want to optimize one molecule or part of a molecule can be both time-consuming and…

For molecular modelers, identifying precise components in complex molecular systems can be an intricate task. Researchers often need granular control when narrowing down their selections, whether it’s finding residues, filtering specific atoms, or identifying bonds of interest. Fortunately, SAMSON’s Node…