Author: OneAngstrom

When creating molecular animations for teaching, presentations, or publications, one common challenge is how to focus viewers’ attention on specific parts of a complex scene. Simply showing everything at once can overwhelm the viewer, making it difficult to follow the…

When working on complex molecular systems, identifying and modifying specific atomic properties can sometimes feel like searching for a needle in a haystack. Whether you’re adjusting atom positions, verifying assignments, or reviewing node properties across selections, having a fast and…

When creating molecular animations, timing is everything. Whether you’re showing a conformational change, a docking process, or a reaction pathway, there are moments when you want your audience to stop and observe. But how do you highlight a critical molecular…

Running NPT equilibration in molecular dynamics is often followed by another significant challenge: accessing and interpreting the results. For users working with GROMACS via SAMSON’s GROMACS Wizard, making sense of calculated outputs can sometimes feel daunting, especially for beginners or…

When working with complex molecular systems, it’s often important to visually follow dynamic changes while maintaining a consistent viewing perspective. For example, you may want to track the conformational motion of a ligand binding to a protein without rotating or…

Creating complex molecular systems often involves the repetitive and precise placement of substructures—like repeatedly stacking rings of atoms or assembling polymers. While this can be done manually, it usually takes time and careful alignment. Fortunately, SAMSON‘s Linear Pattern Editor solves…

Adding lipid bilayers or single lipid layers around a membrane protein is a time-consuming part of many molecular modeling workflows. It often requires switching between tools, writing specialized input files, and manually choosing lipid placements to avoid steric clashes. The…

When preparing scientific animations of molecular systems, one common challenge is showing and hiding molecular components in a clear, meaningful way. For example, when describing a binding pocket or illustrating conformational changes during a simulation, you may want some atoms…