Author: OneAngstrom

Molecular simulations often rely on enhanced sampling techniques to capture rare events or transitions. One such method is Umbrella Sampling, widely used to estimate free energy profiles along reaction coordinates. However, a common challenge many molecular modelers face is determining…

When building animations in molecular modeling, a common challenge is highlighting which atoms or residues are appearing, disappearing, or changing over time. For presentations, educational videos, or simple visualization clarity, we often need a way to guide the viewer’s focus…

Have you ever had a long list of SMILES strings and wished there were an easy, visual way to convert them into 3D structures? Whether you’re building a virtual screening library, exploring molecular properties, or just trying to visualize molecules…

When analyzing molecular structures, it’s common to quickly measure a distance or an angle and move on. But what happens when you need to revisit those measurements later? If you’re using temporary measurements in SAMSON, there’s a high chance you’re…

One common challenge in molecular modeling is distinguishing structural depth in complex representations. When working with multi-layered biomolecular assemblies or detailed ligand-protein interactions, the visual flatness of the scene can make it hard to interpret spatial relationships. Luckily, SAMSON offers…

When preparing molecular animations for presentations, publications, or teaching, one common challenge is how to clearly emphasize the appearance and disappearance of specific molecular components without overwhelming the viewer. Often, researchers find it difficult to control exactly when and how…

If you’ve ever juggled several molecular systems at once—or had to repeatedly copy and paste structures between sessions—you might have wished for a more efficient way to organize and switch between your molecular projects. Whether you’re comparing drug candidates, optimizing…

When creating molecular animations to highlight key interaction sites or structural changes, it’s easy to end up with scenes that shift more than needed — sometimes spinning or panning the camera away from your subject. This kind of camera motion…