Author: OneAngstrom

When setting up molecular docking, one challenge researchers often face is accurately accounting for the flexibility of molecular bonds. Do you make every bond flexible? How do you balance docking accuracy and computational time? If you’ve asked yourself these questions,…

One of the recurring challenges in molecular modeling is simulating interactions between molecular chains. A prime example is center-of-mass (COM) pulling, an essential method for studying molecular dynamics when exploring pulling forces and changes in molecular internal structures. Setting up…

Molecular modeling often requires specialized tools for different tasks, from simulating molecular dynamics to analyzing complex structures. However, finding and integrating these tools can sometimes be challenging for researchers and developers. This is where the SAMSON Extensions Marketplace comes in…

Molecular modeling often requires precision and consistency, especially when preparing animations or movies to showcase a specific perspective of your work. One common challenge that many modelers face is maintaining a steady camera view throughout some frames without unwanted shifts…

For molecular modellers venturing into simulating coarse-grained (CG) molecular systems, one of the crucial steps is the efficient preparation of the system. This can often feel like a daunting process, but it doesn’t have to be! In this post, we…

For molecular modelers, creating captivating visual demonstrations can be a daunting task. Whether you are preparing a presentation for a conference or showcasing molecular processes in a class, you need animations that are not only accurate but also visually appealing.…

For molecular modelers and researchers, having a platform that evolves seamlessly with the specific requirements of their workflows is invaluable. SAMSON, the integrative molecular design platform, goes beyond being just a powerful suite of tools—it actively encourages users to expand…

For molecular modelers, one persistent challenge is finding versatile and specialized tools that cater to unique scientific needs. Imagine if you could easily integrate functionalities such as advanced simulation algorithms, specialized visualization tools, or import/export functionalities without switching platforms. SAMSON…