Author: OneAngstrom

For molecular modelers, keeping track of atomic trajectories during presentations or simulations is often a crucial step. Whether you’re analyzing molecular movements, creating visualizations, or preparing a scientific presentation, precise trajectory tracking allows you to extract valuable insights. This is…

For molecular modelers, software updates can occasionally bring about changes that affect workflows or compatibility with certain plugins and extensions. If you’ve ever needed to revert to an older version of SAMSON, the integrative molecular design platform, this practical guide…

Have you ever found yourself needing more precision when zooming in on specific parts of a molecular system? Or struggled to achieve smooth animations that bring your designs to life? The Dolly camera animation in SAMSON could be the solution…

For molecular modelers, managing input files for simulations can be a tedious process. Ensuring compatibility between steps and maintaining accurate parameters often introduces additional layers of complexity. Thanks to the GROMACS Wizard in SAMSON, the process of selecting and providing…

Molecular modelers often need to study the movement of atoms, whether to perform free energy calculations, investigate ligand unbinding pathways, or visualize reaction coordinates. However, simplifying and exporting these atomic trajectories can be challenging without the right tools. The Export…

For molecular modelers, effective visualization and presentation of structures and simulations can be essential for communicating complex ideas or sharing results. Have you ever faced challenges in cleanly showing or hiding parts of your molecular system during an animation? The…

Visualizing molecular structures and their transformations is a challenging yet crucial task for molecular modelers. Among the many visualization tools available in SAMSON, the ‘Reveal Atoms’ animation stands out for its ability to progressively display atoms and bonds, aiding in…

For molecular modelers, preparing and validating protein structures is a critical step before embarking on tasks like docking, molecular dynamics, or drug design. Without careful preparation, downstream tasks can encounter inaccuracies or even fail completely. If you’ve ever struggled with…