Author: OneAngstrom

For molecular modelers and simulation experts, configuring molecular dynamics parameters in your workflow can often feel like navigating uncharted waters. While default settings may generally suffice, there are times when achieving specific results requires tweaking advanced parameters. If this scenario…

Designing DNA nanostructures is an intricate and rewarding process, but starting every design from scratch can be time-consuming and inefficient. Whether you’re working on prototyping DNA origami, preparing models for simulation, or integrating them with proteins, reusing existing high-quality structures…

Presenting your molecular models in an engaging and visual manner is crucial for effectively communicating your research or design findings. Whether you are showcasing structural dynamics, docking processes, or complex simulations, SAMSON provides the tools you need to create professional-grade…

Streamlining workflows is essential for molecular modelers, and managing Python packages effectively can significantly enhance productivity. With SAMSON’s integrated Python environment, you can quickly and easily handle Python packages directly from within the platform. Let’s take a closer look at…

If you’ve ever worked with molecular modeling simulations, you know the frustration of non-unique chain and residue identifiers in your structural models. They can cause issues down the line, especially when preparing topologies for coarse-grained simulations or other related tasks.…

Molecular modeling often involves working with complex biological assemblies such as protein complexes or viral capsids. For molecular modelers, understanding the symmetry of these assemblies is crucial. Symmetry not only helps identify functional interfaces but also reduces computational costs by…

Molecular modeling often involves a series of intricate operations to design precise molecular structures. But what happens when an action doesn’t yield the expected result, or you need to reverse several steps to revisit a previous state? This is where…

Molecular modeling requires intuitive tools that make complex tasks more manageable. If you frequently work with molecular structures, chances are you’ve encountered situations where selecting, transforming, or creating structures demands precision and flexibility. In SAMSON, these tasks are handled by…