Author: OneAngstrom

For molecular modelers, precise control over simulation settings often feels like navigating a forest of parameters, especially when tailoring molecular dynamics simulations. GROMACS Wizard within the SAMSON platform offers a user-friendly and flexible solution: an advanced parameter editor to streamline…

For molecular modelers and researchers, presenting molecular designs dynamically can deeply enhance understanding and engagement. Static visualizations often miss the opportunity to highlight subtle, but crucial spatial relationships. This is where SAMSON’s Move camera animation comes into play, allowing for…

Energy minimization is a crucial step in molecular modeling and simulations. It ensures that your system is geometrically optimized by relaxing steric clashes and improving local geometries before moving forward to equilibration. If you’ve been looking for a streamlined approach…

For molecular modelers, navigating software installation hurdles can be frustrating, especially when admin rights are required — a common challenge in organizational settings and on shared machines. Thankfully, SAMSON, the integrative molecular design platform, eliminates this hurdle by not requiring…

For molecular modelers, building solvent boxes or custom molecular assemblies can be a repetitive and time-consuming task, especially when accuracy is key. SAMSON’s Molecular Box Builder is designed to simplify this process and save you significant time. Whether you’re creating…

Working with complex molecular structures can be overwhelming. Navigating through dense protein assemblies or visualizing intricate binding sites often becomes challenging with traditional rendering techniques that abruptly cut off parts of the molecule. Enter progressive clipping in SAMSON — a…

For molecular modelers, selecting specific residues and structures within complex models can be a frequent yet cumbersome task. The more intricate the molecule, the more tedious manual searching and selecting becomes. This is where the Sequence View in SAMSON shines,…

For molecular modelers, symmetry detection in biological assemblies is a game changer. Symmetry can provide critical shortcuts in the complex workflows of protein modeling and molecular design. Whether you’re working with protein complexes, viral capsids, or other biological assemblies, understanding their…