Author: OneAngstrom

For molecular modelers and researchers, achieving the ideal visualization of complex molecular systems can often feel daunting. Simplifying these intricate representations without losing clarity or precision is a common pain point. SAMSON, the integrative molecular design platform, tackles this effectively…

Molecular modeling can often be a challenging task, particularly when dealing with systems that require frequent edits to chemical bonds or topology. For researchers and modelers, finding an intuitive way to modify molecular structures interactively without losing physical accuracy has…

For molecular modelers studying proteins, understanding backbone conformations is a cornerstone of accurate structural analysis. Ramachandran plots, which chart phi (Φ) and psi (Ψ) angles, are a crucial tool for analyzing backbone torsional states. In this post, let's explore how…

Molecular modeling often involves creating detailed presentations or simulations to convey complex concepts effectively. One common challenge is the need to focus attention on specific frames or moments during a presentation. This is where the Pause animation feature in the…

Working with complex molecular models often involves juggling multiple data structures, visualizations, and intricate details. For molecular modelers, keeping track of various aspects of a model can become overwhelming, especially when handling hierarchical data. This is where the Document View…

Molecular modelers often encounter scenarios where standard index groups automatically generated by GROMACS just aren’t enough. Whether you need to isolate specific residues, define pull groups, or prepare for advanced analysis, creating custom index groups can significantly streamline your workflow.…

When working on molecular simulations, selecting the right unit cell for your system is crucial for both efficiency and accuracy, especially with periodic boundary conditions in mind. This blog post will help you understand the impact of choosing different unit…