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When presenting molecular animations, maintaining audience engagement often requires precise timing. One common challenge for molecular modelers is ensuring viewers have enough time to absorb core moments of a presentation, such as a critical conformational change or a molecular interaction.…

For molecular modelers, ensuring the structural integrity of proteins is critical, whether you’re refining a homology model or preparing a structure for simulation. One key challenge often faced is identifying and correcting strained residues in a protein structure. This is…

Have you ever struggled to keep your molecular models clear during analysis or presentations? Labels in SAMSON, the integrative molecular design platform, allow you to highlight important nodes such as molecules, residues, and atoms. However, managing their visibility effectively is…

If you’re a molecular modeler, you’ve likely encountered challenges while preparing your molecular system for accurate simulations. One critical step in this process is system equilibration, and a common pain point is ensuring that your system reaches the target temperature…

Molecular designers often face the challenge of optimizing specific parts of complex molecular systems instead of the entire structure. This need arises when focusing on a specific area for detailed study or simulation. Performing selective minimization effectively is often a…

For molecular modelers working with GROMACS, one pain point that often arises is the need to extend beyond default index groups to define custom subsets of atoms or residues for advanced workflows. Whether it’s for pulling simulations, complex analyses, or…

When diving into molecular modeling, managing your workspace effectively can be challenging—especially as you navigate complex structures and presentations. This is where mastering camera functionality in SAMSON becomes a game-changer. A camera in SAMSON not only helps you visualize molecular…

If you're working in molecular modeling or structural biology, you likely understand the importance of studying protein motions. One of the most fascinating yet complex motions to uncover is the SARS-CoV-2 spike's transition from a closed to an open state.…