An essential aspect of molecular modeling is creating intuitive, interactive, and visually compelling presentations that effectively communicate the dynamics of molecules. One frequent pain point for modelers lies in navigating and showcasing specific views to highlight key molecular behaviors. SAMSON’s…

Molecular modelers often need to refine rough transition paths when studying complex molecular systems. These paths, which connect important conformational states of molecules (e.g., ligands moving through proteins), can sometimes be physically inaccurate or unrealistic when first generated. This is…

In molecular modeling and design, clear and effective visual presentations can make a significant difference. But what happens when you need to highlight specific details while simplifying your visualizations? The ‘Conceal Atoms’ animation in SAMSON comes to the rescue by…

A common challenge faced by molecular modelers is monitoring the structural changes of molecules during simulations. Compaction, expansion, or large-scale shape changes can have significant impacts on molecular behavior. One useful tool to tackle this challenge is the Radius of…

For molecular modelers, the ability to easily inspect and modify attributes of molecules and molecular components can be a game-changer. Whether working with individual atoms or groups of nodes, SAMSON’s Inspector provides an intuitive and flexible way to view and…

One common challenge in molecular modeling and drug design is efficiently exploring how small changes in the structure of a molecule can influence its properties and interactions. This is where positional analogue scanning can make a significant difference. In this…

If you are a molecular modeler, you’ve likely faced challenges in creating clear and engaging presentations of your structures. Highlighting specific features while maintaining simplicity is crucial, especially when presenting to non-specialist audiences. One effective approach to simplify visuals is…

For molecular modelers, precision is everything. Whether you are analyzing bond lengths or tracking dihedral angles, having accurate and accessible measurements at your fingertips can significantly enhance your molecular modeling process. This is where the Measure editor in SAMSON comes…

Molecular modeling often involves overcoming steric clashes, poor local geometry, and other structural inefficiencies before moving on to computationally intensive simulations. The Energy Minimization (EM) process is a critical step to ensure your molecular system is in a relaxed state.…