Molecular modelers working with GROMACS know the importance—and the complexity—of setting the right molecular dynamics parameters. Whether it’s energy minimization, NVT/NPT equilibration, or production simulations, configuring .mdp (molecular dynamics parameter) files can become a time-consuming part of the workflow, especially…

Creating Python scripts to manipulate molecular models can be time-consuming, especially if you’re learning the SAMSON API or trying to prototype quickly. Fortunately, SAMSON AI introduces a useful shortcut: the /script command. This feature allows SAMSON AI to generate Python…

For many molecular modelers working on nanotechnology, designing carbon nanotubes (CNTs) is a frequent need—but doing it manually can be tedious and error-prone. Whether you’re trying to create a specific chirality or simulate functionalized tube ends, having fine control over…

When presenting a molecular scene, one common challenge is building a focused yet smooth transition between frames—especially when you’re trying to guide the viewer’s attention to a specific region of a molecule. Standard zooms often feel abrupt or force you…

When presenting complex molecular systems, timing is everything. Whether you’re walking students through conformational changes or preparing a highlight reel for a publication, controlling the flow of your animation can be the difference between clarity and confusion. One small, often…

Long hours spent designing, exploring, and visualizing molecular structures often mean long hours in front of a screen. If you’ve ever felt eye strain while working late into the evening in SAMSON, there’s a simple tweak that could make a…

It’s not uncommon for molecular modelers to encounter structures that are incredibly dense or complex. When working with large biomolecular assemblies or intricate materials, overlapping atoms and meshes can make it difficult to understand spatial relationships or highlight specific areas…