Many molecular modelers spend hours working with intricate structures, adjusting render settings, and preparing visuals for publications or presentations. If you’re someone who often finds yourself working in dim lighting or during evening hours, you’ve likely experienced some discomfort from…

Labels are a critical part of molecular visualization — they help identify atoms, residues, molecules, and key spatial measurements. But if you’re a molecular modeler working in SAMSON and your Viewport looks cluttered or unclear, misaligned labels might be the…

One of the most frequent issues faced when interpolating between protein conformations is something many don’t anticipate: disconnected molecular structures. If you’ve ever encountered the error message “Cannot proceed because the structure does not make one connected component” while using…

Precise control over molecular geometries is a core part of any modeling or simulation workflow. Whether you’re adjusting a ligand orientation, fine-tuning a molecular assembly, or preparing a structure for simulation, moving atoms and molecular fragments accurately is essential. This…

Understanding how molecules interact at the atomic level can make or break a drug discovery or molecular design project. Yet, identifying and interpreting specific interactions—hydrogen bonds, steric clashes, aromatic stacking—can be tricky, especially when working solely in 3D. This is…

In molecular modeling, visual clarity is essential when communicating complex structures and mechanisms. Whether you’re showcasing a protein-ligand interaction or preparing an educational molecular scene, the way elements appear and disappear can greatly influence how well your audience understands molecular…

Running molecular dynamics simulations often requires significant computational resources — the kind most laptops or even desktops can’t provide for large or long simulations. For many molecular modelers, this turns an exciting project into a frustrating wait. One elegant solution…