One of the most critical challenges in molecular modeling is ensuring that your molecular structures are perceived correctly. While automated perception systems, like those in UFF, are powerful, advanced users often need more control to refine typization for non-standard cases…

Path recording is a valuable tool for molecular modelers looking to analyze and present the dynamic trajectories of atoms in a simulation. By using the Record path animation in SAMSON, you can document these atomic movements and create visual tracks…

Preparing coarse-grained molecular systems for simulations can often be a hurdle. From generating a periodic box to solvating the system and adding ions, the process requires attention to detail and precise configurations. That’s where SAMSON’s GROMACS Wizard comes in, offering…

Protein preparation is often one of the most overlooked yet crucial steps in molecular modeling workflows. A poorly prepared protein model can lead to errors in simulations, inaccurate binding energy calculations, or time wasted troubleshooting. The good news? The SAMSON…

For molecular modelers and researchers, designing tailored polymers can be an essential part of exploring new materials, modeling complex systems, or simulating biopolymer behaviors. SAMSON’s Polymer Builder provides a versatile solution, especially with its ability to register custom monomers. In…

When working with molecular simulations, comprehending the motion of key atomic groups can be a challenging task. Whether you’re examining ligand unbinding pathways or studying complex protein conformational changes, it is often difficult to visualize the exact trajectory of atoms…

Molecular modelers often face a significant challenge during production molecular dynamics (MD) simulations: organizing and providing the correct input structures from previous steps. This step is crucial to ensure continuity and accuracy in the simulation process. In this blog post,…

Molecular modelers often face the challenge of efficiently managing and refining generated analogs during their design workflows. Whether it’s tweaking structures for better binding affinities or exploring functional group modifications, small adjustments can often make the difference in achieving impactful…

Molecular modeling can often feel like an overwhelming task, especially when you’re navigating new tools or trying to master advanced features. If you’ve ever wished for step-by-step guidance as you work inside a platform, SAMSON’s Interactive Tutorials might just be…